Jatropha Genome Database

JcCA0307751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307751.10 + phase: 0 /TE/partial
         (180 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g01990.1                                                        55   4e-08
Glyma03g15840.1                                                        53   2e-07
Glyma09g27090.1                                                        52   4e-07
Glyma01g34900.1                                                        48   4e-06

>Glyma13g01990.1 
          Length = 196

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 2/127 (1%)

Query: 17  QLDATVLQWIYGTISVDLLNTILETDSTAQNAWDRLKGIFQDNKNSRALYLENQFSHVLL 76
           + D  +  WI GT+S + L  ++  D TA   W  LK  + +    R   L  Q +++  
Sbjct: 50  KTDHLLQGWIIGTLSEEALGLVVGLD-TAHAVWTALKDSYAEYSQEREFTLRQQITYLCK 108

Query: 77  DDFPNISAYCQELKMLSDQLSNVGAPVSNQRLVLQLIAGLNEAYDGVATIIQQSDPLPLF 136
           +D  +I  + +  K L D L+++G PV ++     L+  L   Y+   T + +  P P +
Sbjct: 109 EDDQSIGEHIRTFKGLCDNLASIGKPVPDKEKAFYLLTSLGHEYETFTTTMLKP-PRPSY 167

Query: 137 YEAXSKL 143
            E  S+L
Sbjct: 168 SELISQL 174


>Glyma03g15840.1 
          Length = 235

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 25  WIYGTISVDLLNTILETDSTAQNAWDRLKGIFQDNKNSRALYLENQFSHVLLDDFPNISA 84
           WI GT+S + L  ++  D T    W  LK  + ++   R   L  Q +++  +D  +I  
Sbjct: 8   WIIGTLSEEALGLVVGLDIT-HAVWTALKYSYAEDPQEREFTLRQQITYLRKEDDQSIGE 66

Query: 85  YCQELKMLSDQLSNVGAPVSNQRLVLQLIAGLNEAYDGVATIIQQSDPLPLFYEAXSKL 143
           + +  K L D L+ +G PV ++  V  L+  L   Y+   T + +  P P + E  S+L
Sbjct: 67  HIRTFKGLCDNLAAIGKPVPDKEKVFYLLTSLGHEYETFTTTMLKP-PRPSYSELISQL 124


>Glyma09g27090.1 
          Length = 112

 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 32/48 (66%)

Query: 100 GAPVSNQRLVLQLIAGLNEAYDGVATIIQQSDPLPLFYEAXSKLILEE 147
           G  +S   LV+QL++GL  AY GV  +IQQSD  P FY+A   LILEE
Sbjct: 56  GECLSKSCLVIQLVSGLTSAYRGVGMLIQQSDHQPSFYQARLMLILEE 103


>Glyma01g34900.1 
          Length = 805

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 60/106 (56%), Gaps = 4/106 (3%)

Query: 30  ISVDLLNTILETDSTAQNAWDRLKGIFQDNKNSRALYLENQFSHVLLDDFPNISAYCQEL 89
           +++D+   +L  + T++  WD  + +   +  SR +YL+++F +    +   +  Y  ++
Sbjct: 1   MAIDIATQLLHCE-TSKELWDEAQSLAGAHTKSRTIYLKSEFHNTRKGEM-KMDQYLLKM 58

Query: 90  KMLSDQLSNVGAPVSNQRLVLQLIAGLNEAYDGVATIIQQSDPLPL 135
           K L+D+L   G+P+SN  L +Q + GL+  Y+ V  +++ SD + L
Sbjct: 59  KNLADKLKLAGSPISNSDLTIQTLNGLDADYNPV--VVKLSDQINL 102