Jatropha Genome Database

JcCA0307631.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307631.20 - phase: 0 
         (83 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g21730.3                                                        84   4e-17
Glyma13g21730.2                                                        84   4e-17
Glyma13g21730.1                                                        84   4e-17
Glyma10g07950.1                                                        53   8e-08

>Glyma13g21730.3 
          Length = 90

 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 48/66 (72%)

Query: 16 VEKLETTFTCPFCNHRHSVACVIDRKLGFGEAECSVCKVNYVTKINPLTEPIDIYSEWID 75
          ++KL+T F+CPFCNH  SV C +D K   GEA C +C+ ++ T I  L+EPIDIYSEWID
Sbjct: 16 MDKLDTVFSCPFCNHGSSVECRLDMKNLIGEAICGICQESFSTTITALSEPIDIYSEWID 75

Query: 76 ECVGVN 81
          EC  VN
Sbjct: 76 ECELVN 81


>Glyma13g21730.2 
          Length = 90

 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 48/66 (72%)

Query: 16 VEKLETTFTCPFCNHRHSVACVIDRKLGFGEAECSVCKVNYVTKINPLTEPIDIYSEWID 75
          ++KL+T F+CPFCNH  SV C +D K   GEA C +C+ ++ T I  L+EPIDIYSEWID
Sbjct: 16 MDKLDTVFSCPFCNHGSSVECRLDMKNLIGEAICGICQESFSTTITALSEPIDIYSEWID 75

Query: 76 ECVGVN 81
          EC  VN
Sbjct: 76 ECELVN 81


>Glyma13g21730.1 
          Length = 90

 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 48/66 (72%)

Query: 16 VEKLETTFTCPFCNHRHSVACVIDRKLGFGEAECSVCKVNYVTKINPLTEPIDIYSEWID 75
          ++KL+T F+CPFCNH  SV C +D K   GEA C +C+ ++ T I  L+EPIDIYSEWID
Sbjct: 16 MDKLDTVFSCPFCNHGSSVECRLDMKNLIGEAICGICQESFSTTITALSEPIDIYSEWID 75

Query: 76 ECVGVN 81
          EC  VN
Sbjct: 76 ECELVN 81


>Glyma10g07950.1 
          Length = 77

 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 16 VEKLETTFTCPFCNHRHSVACVIDRKLGFGEAECSVCKVNYVTKINPL 63
          ++KL+T F+CPFCNH  SV C +D K   GEA C +C+ ++ T I  L
Sbjct: 16 MDKLDTVFSCPFCNHGSSVECRLDMKNLIGEAICGICQESFSTTITGL 63