Jatropha Genome Database

JcCA0307371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307371.10 + phase: 0 
         (327 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g04120.1                                                       476   e-134
Glyma20g08930.1                                                       471   e-133
Glyma17g21180.1                                                       163   3e-40

>Glyma13g04120.1 
          Length = 414

 Score =  476 bits (1225), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 236/337 (70%), Positives = 271/337 (80%), Gaps = 10/337 (2%)

Query: 1   MATAHLLCNNHIFNPSRHSFSKSNLPSTRPSGSVYFNQR---QRVPLVKA-------TKK 50
           MA++  LC+N++F  S++ F  ++L   RP+G   F+ +   QR  LV+A       +++
Sbjct: 1   MASSLFLCSNYVFPTSQNPFRSNHLAQFRPNGPSNFHSKLRFQRPHLVRAMVSDSNTSRR 60

Query: 51  QLEIVYDPDERLNKLADDVDKNAPLSRLTLFSPCKINVFLRITSKREDGYHDLASLFHVI 110
           Q+EIVYDP+ R+NKLAD+VD+  PLSRLTLFSPCKINVFLRIT+KREDGYHDLASLFHVI
Sbjct: 61  QIEIVYDPEGRINKLADEVDRETPLSRLTLFSPCKINVFLRITNKREDGYHDLASLFHVI 120

Query: 111 SLGDTIKFSLSPSKSKDRLSTNVSGVPLDERNLVIKALNLYRKKTGTDNFFWIHLDKKVP 170
           SLGD IKFSLSPSK+KD LSTNVSGVPLD+RNL+IKALNLYRKKTG+D +FWIHLDK+VP
Sbjct: 121 SLGDIIKFSLSPSKTKDSLSTNVSGVPLDDRNLIIKALNLYRKKTGSDKYFWIHLDKRVP 180

Query: 171 XXXXXXXXXXXXXXXXWAANQFSGGIATENDLLEWSSEIGSDISFFFSHGAAYCTGRGEI 230
                           WAANQFSG  A+E +L EWSSEIGSDI FFFS GAAYCTGRGE+
Sbjct: 181 TGAGLGGGSSNAATTLWAANQFSGCPASEKELQEWSSEIGSDIPFFFSQGAAYCTGRGEV 240

Query: 231 VQDIPSPVPLDIPMVLIKPQEACPTGEVYKRFRLDQTSQVDPLTLLEKISNSGISQDVCI 290
           VQ+IP PV LD+PMVLIKP EAC T EVYKR  LDQTS V+PLTLLEKIS  GISQDVCI
Sbjct: 241 VQNIPPPVSLDVPMVLIKPPEACSTAEVYKRLCLDQTSNVEPLTLLEKISKIGISQDVCI 300

Query: 291 NDLEPPAFEVLPSLKRLKQRIMAASRGQYDAVFMSGR 327
           NDLEPPAFEVLPSLKRLKQRI AA RG+YDAVFMSGR
Sbjct: 301 NDLEPPAFEVLPSLKRLKQRISAAGRGEYDAVFMSGR 337


>Glyma20g08930.1 
          Length = 395

 Score =  471 bits (1213), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/336 (69%), Positives = 269/336 (80%), Gaps = 10/336 (2%)

Query: 1   MATAHLLCNNHIFNPSRHSFSKSNLPSTRPSGSVYFNQR---QRVPLVKA-------TKK 50
           MA++  LC+N++   S++ F   +L   RP+G+  F+ +   QR  LV+A       +++
Sbjct: 1   MASSLFLCSNYVSPTSQNPFRSIHLAQFRPNGTSNFHSKLRFQRPHLVRAMVSDSNTSRR 60

Query: 51  QLEIVYDPDERLNKLADDVDKNAPLSRLTLFSPCKINVFLRITSKREDGYHDLASLFHVI 110
           Q+EIVYDP+ R+NKLAD+VD+ A LSRLTLFSPCKINVFLRIT+KREDGYHDLASLFHVI
Sbjct: 61  QIEIVYDPEGRINKLADEVDREASLSRLTLFSPCKINVFLRITNKREDGYHDLASLFHVI 120

Query: 111 SLGDTIKFSLSPSKSKDRLSTNVSGVPLDERNLVIKALNLYRKKTGTDNFFWIHLDKKVP 170
           SLGD IKFSLSPSK+KD LSTNVSGVPLD+RNL+IKALNLYRKKTG+D +FWIHLDK+VP
Sbjct: 121 SLGDIIKFSLSPSKTKDSLSTNVSGVPLDDRNLIIKALNLYRKKTGSDKYFWIHLDKRVP 180

Query: 171 XXXXXXXXXXXXXXXXWAANQFSGGIATENDLLEWSSEIGSDISFFFSHGAAYCTGRGEI 230
                           WAANQFSG  A+E +L EWSSEIGSDI FFFS GAAYCTGRGE+
Sbjct: 181 TGAGLGGGSSNAATALWAANQFSGCPASEKELQEWSSEIGSDIPFFFSQGAAYCTGRGEV 240

Query: 231 VQDIPSPVPLDIPMVLIKPQEACPTGEVYKRFRLDQTSQVDPLTLLEKISNSGISQDVCI 290
           VQ+IP PV LD+PMVLIKP EAC T EVYK  RLDQTS VDPLTLLEKIS  GISQDVCI
Sbjct: 241 VQNIPPPVSLDVPMVLIKPPEACSTAEVYKCLRLDQTSNVDPLTLLEKISKIGISQDVCI 300

Query: 291 NDLEPPAFEVLPSLKRLKQRIMAASRGQYDAVFMSG 326
           NDLEPPAFEVLPSLKRLKQRI AA RG+YDAVFMSG
Sbjct: 301 NDLEPPAFEVLPSLKRLKQRISAAGRGEYDAVFMSG 336


>Glyma17g21180.1 
          Length = 128

 Score =  163 bits (412), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/130 (67%), Positives = 95/130 (73%), Gaps = 4/130 (3%)

Query: 100 YHDLASLFHVISLGDTIKFSLSPSKSKDRLSTNVSGVPLDERNLVIKALNLYRKKTGTDN 159
           Y +L SL  VISLGD IKFSLSPSK+KD LSTNVSGVPLD+RNL   ALNLYRKKTG+D 
Sbjct: 3   YLNLLSL-QVISLGDIIKFSLSPSKTKDSLSTNVSGVPLDDRNL---ALNLYRKKTGSDK 58

Query: 160 FFWIHLDKKVPXXXXXXXXXXXXXXXXWAANQFSGGIATENDLLEWSSEIGSDISFFFSH 219
           +F IHLDK VP                WAANQFSG  A+E +L EWSSEIGSDI FFFS 
Sbjct: 59  YFGIHLDKWVPTGAGLGGGSSNAATALWAANQFSGCPASEKELQEWSSEIGSDIPFFFSQ 118

Query: 220 GAAYCTGRGE 229
           GAAY TGRGE
Sbjct: 119 GAAYYTGRGE 128