Jatropha Genome Database

JcCA0306361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0306361.10 - phase: 0 
         (131 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g28920.1                                                        61   4e-10
Glyma15g10120.1                                                        60   4e-10

>Glyma13g28920.1 
          Length = 98

 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 38  TSPKEPAQYQVFYIKNAQPFFLDDNEGLIXXXXXXXXXXXXXXXXX---------QIKNF 88
           T+P    Q+QVFY+KN     L   E                             Q    
Sbjct: 10  TNPTHYHQHQVFYLKNKDSTTLSKQEQRFKKRRIKRNTSKNMMMMKHRKKMVKNLQQTRD 69

Query: 89  KTRAFSVMLPKGFVPPSGSSPCHNEKPTS 117
            +RAFSVMLPKGFVPPSGSSPCHN++P S
Sbjct: 70  SSRAFSVMLPKGFVPPSGSSPCHNDQPNS 98


>Glyma15g10120.1 
          Length = 136

 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 30/34 (88%)

Query: 90  TRAFSVMLPKGFVPPSGSSPCHNEKPTSRLTFHC 123
           +RAFSVMLPKGFVPPSGSSPCHN++P S  +F C
Sbjct: 100 SRAFSVMLPKGFVPPSGSSPCHNDQPNSVSSFRC 133