Jatropha Genome Database

JcCA0305691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0305691.10 + phase: 0 /partial
         (218 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g39110.1                                                        58   6e-09
Glyma12g31190.1                                                        57   1e-08
Glyma12g31190.3                                                        50   1e-06

>Glyma13g39110.1 
          Length = 472

 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 53/99 (53%), Gaps = 3/99 (3%)

Query: 121 VEKQRKSKKSTEKLDELDAIDNGETSFADFFSVNYVESSKHSVEKKLIDKAGENINSTGG 180
           VEK+ K +   ++  ELD ID+ E SFA+ F +N  E+   + E K  DKA +++    G
Sbjct: 374 VEKKLKKQHKNDEQSELDVIDDAEASFAELFKINDAENLNLADEMKAQDKAPKDVMKLAG 433

Query: 181 -LVTLSAKKKKTKNRVANHAVQLPAEVEVGMGGPSTWDD 218
             VT  AK K  K  + N         E+GMGGPSTW D
Sbjct: 434 DPVTSFAKHKNAK--IQNMESLSAPVAEIGMGGPSTWGD 470


>Glyma12g31190.1 
          Length = 942

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 136 ELDAIDNGETSFADFFSVNYVESSKHSVEKKLIDKAGENINSTGGLVTLSAKKKKTKNRV 195
           ELD ID+ E SFA+ F +N  E+     E +  DK  +++   G  VT  AK+K  K  +
Sbjct: 861 ELDVIDDAEASFAELFKINDAENLNLVDEMRARDKVPKDVKLAGDTVTSFAKRKNAK--M 918

Query: 196 ANHAVQLPAEVEVGMGGPSTWDD 218
            N       E EVGMGGPSTW D
Sbjct: 919 QNIESLSAPEAEVGMGGPSTWGD 941


>Glyma12g31190.3 
          Length = 444

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 40/83 (48%), Gaps = 14/83 (16%)

Query: 136 ELDAIDNGETSFADFFSVNYVESSKHSVEKKLIDKAGENINSTGGLVTLSAKKKKTKNRV 195
           ELD ID+ E SFA+ F +N  E+    V+              G  VT  AK+K  K  +
Sbjct: 375 ELDVIDDAEASFAELFKINDAENLNLDVK------------LAGDTVTSFAKRKNAK--M 420

Query: 196 ANHAVQLPAEVEVGMGGPSTWDD 218
            N       E EVGMGGPSTW D
Sbjct: 421 QNIESLSAPEAEVGMGGPSTWGD 443