Jatropha Genome Database

JcCA0304521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304521.10 - phase: 0 /partial/short
         (44 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g00400.4                                                        66   8e-12
Glyma01g00400.3                                                        66   8e-12
Glyma01g00400.1                                                        66   8e-12
Glyma08g47470.1                                                        64   5e-11

>Glyma01g00400.4 
          Length = 206

 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 38/44 (86%)

Query: 1   MEVRLSDEKDLPQQDKQQINRDLKLFLKPVREKLLQFEQELKDR 44
           +EVRLS+ +D+  QDK QI  DLKLFL+PVREKLLQFEQELKDR
Sbjct: 163 VEVRLSEARDILHQDKTQICNDLKLFLQPVREKLLQFEQELKDR 206


>Glyma01g00400.3 
          Length = 206

 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 38/44 (86%)

Query: 1   MEVRLSDEKDLPQQDKQQINRDLKLFLKPVREKLLQFEQELKDR 44
           +EVRLS+ +D+  QDK QI  DLKLFL+PVREKLLQFEQELKDR
Sbjct: 163 VEVRLSEARDILHQDKTQICNDLKLFLQPVREKLLQFEQELKDR 206


>Glyma01g00400.1 
          Length = 206

 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 38/44 (86%)

Query: 1   MEVRLSDEKDLPQQDKQQINRDLKLFLKPVREKLLQFEQELKDR 44
           +EVRLS+ +D+  QDK QI  DLKLFL+PVREKLLQFEQELKDR
Sbjct: 163 VEVRLSEARDILHQDKTQICNDLKLFLQPVREKLLQFEQELKDR 206


>Glyma08g47470.1 
          Length = 202

 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/44 (70%), Positives = 38/44 (86%)

Query: 1   MEVRLSDEKDLPQQDKQQINRDLKLFLKPVREKLLQFEQELKDR 44
           +EVRLS+ +D+  QDK Q+  DLKLFL+PVREKLLQFEQEL+DR
Sbjct: 159 VEVRLSEARDILHQDKTQMRNDLKLFLQPVREKLLQFEQELRDR 202