Jatropha Genome Database

JcCA0302891.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302891.20 + phase: 1 /TE/pseudo/partial
         (236 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g24430.1                                                        67   2e-11
Glyma05g08780.1                                                        52   5e-07
Glyma16g28430.1                                                        50   3e-06

>Glyma17g24430.1 
          Length = 1197

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 7   KVKIAALQSDGKAMQWHXGFLKLKGEGVYTNWEEYVKFLNARFXNQAFDDPLAELRNLRQ 66
           KV++A +  +GKA+QWH  ++K  G     +W EY   L  RF     +DP+A+L  LRQ
Sbjct: 90  KVRLAVVHFEGKALQWHSAYIKSVGLENLPSWNEYQILLLDRF-GDVCEDPMADLIKLRQ 148

Query: 67  NNSLQQYLDSFNELYPKAGITENQALSFFLSG 98
             S+ +Y + F+ +  +  +++   LS+FL G
Sbjct: 149 TGSIIEYHEEFDSIVSRIDLSDEHQLSYFLGG 180


>Glyma05g08780.1 
          Length = 1853

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 7   KVKIAALQSDGKAMQWHXGFLKLKGEGVYTNWEEYVKFLNARFXNQAFDDPLAELRNLRQ 66
           ++ IA+   DG A+ W   +  +   G + +W   ++ L +RF    +DDP   L  L+Q
Sbjct: 124 RLTIASFYMDGPALSW---YQWMHRNGYFPSWPAMLQALESRFAPSFYDDPQGSLFKLQQ 180

Query: 67  NNSLQQYLDSFNELYPKA-GITENQALSFFLSG 98
             S+  YL +F  L  +  GI  +  LS F+SG
Sbjct: 181 TGSVTDYLTAFERLANRTIGIAPSSLLSCFVSG 213


>Glyma16g28430.1 
          Length = 1525

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 6   NKVKIAALQSDGKAMQWHXGFLKLKGEGVYTNWEEYVKFLNARFXNQAFDDPLAELRNLR 65
           +K+ IA+   +G+A+ W   F  +     + +W  ++  L  RF    F+DP   L  L 
Sbjct: 177 DKLTIASFYMEGRALAW---FQWMNTSEQFPSWPAFLHALRTRFAPSQFEDPSGALSKLT 233

Query: 66  QNNSLQQYLDSFNELYPK-AGITENQALSFFLSG 98
           Q  ++ QYL  F +L  +  G+     LS F+SG
Sbjct: 234 QTGTVTQYLSDFEDLANRTTGLPSTFLLSCFISG 267