Jatropha Genome Database

JcCA0302271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302271.10 + phase: 0 
         (63 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g37820.1                                                        91   3e-19
Glyma02g01570.1                                                        89   1e-18
Glyma10g01600.1                                                        87   4e-18

>Glyma03g37820.1 
          Length = 103

 Score = 90.5 bits (223), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/63 (69%), Positives = 45/63 (71%)

Query: 1   MAGGKIAHATLKGPSVVKEXXXXXXXXXXXXXXWKMHHWNEQRKVRAFYDLLEKGEISVV 60
           MAG +IAHATLKGPSVVKE              WKMHHWNEQRK RAFYDLLEK EISVV
Sbjct: 40  MAGPRIAHATLKGPSVVKEICIGMVLGLAAGSVWKMHHWNEQRKTRAFYDLLEKDEISVV 99

Query: 61  VDE 63
            DE
Sbjct: 100 ADE 102


>Glyma02g01570.1 
          Length = 64

 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 45/63 (71%)

Query: 1  MAGGKIAHATLKGPSVVKEXXXXXXXXXXXXXXWKMHHWNEQRKVRAFYDLLEKGEISVV 60
          MAG +IAHATLKGPSVVKE              WKMHHWNEQRK R FYDLLEKGEISVV
Sbjct: 1  MAGPRIAHATLKGPSVVKEIIIGITLGLAAGSVWKMHHWNEQRKTRTFYDLLEKGEISVV 60

Query: 61 VDE 63
           +E
Sbjct: 61 AEE 63


>Glyma10g01600.1 
          Length = 64

 Score = 87.0 bits (214), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/63 (66%), Positives = 45/63 (71%)

Query: 1  MAGGKIAHATLKGPSVVKEXXXXXXXXXXXXXXWKMHHWNEQRKVRAFYDLLEKGEISVV 60
          MAG +IAHATLKGPSVVKE              WKMHHWNEQRK R FYDLLEKGEI+VV
Sbjct: 1  MAGPRIAHATLKGPSVVKEIIIGITLGLAAGGVWKMHHWNEQRKTRTFYDLLEKGEITVV 60

Query: 61 VDE 63
           +E
Sbjct: 61 AEE 63