Jatropha Genome Database

JcCA0302081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302081.10 + phase: 1 /partial
         (54 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g04840.1                                                       110   5e-25
Glyma19g32680.1                                                       109   5e-25
Glyma19g32690.1                                                       109   5e-25
Glyma03g29800.1                                                       109   5e-25
Glyma11g00450.1                                                       109   6e-25
Glyma03g29810.1                                                       109   6e-25
Glyma12g00610.1                                                       108   1e-24
Glyma01g45270.1                                                       106   5e-24

>Glyma14g04840.1 
          Length = 122

 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 51/54 (94%), Positives = 54/54 (100%)

Query: 1   RKSPCGEGTNTWDRFELRVHKRVIDLFSSPEVVKQITSITIEPGVEVEVTIADS 54
           RKSPCGEGTNTWDRFELRVHKRVIDL+SSP+VVKQITSITIEPGVEVEVTIAD+
Sbjct: 69  RKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 122


>Glyma19g32680.1 
          Length = 123

 Score =  109 bits (273), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 51/54 (94%), Positives = 54/54 (100%)

Query: 1   RKSPCGEGTNTWDRFELRVHKRVIDLFSSPEVVKQITSITIEPGVEVEVTIADS 54
           RKSPCGEGTNTWDRFELRVHKRVIDL+SSP+VVKQITSITIEPGVEVEVTIAD+
Sbjct: 70  RKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 123


>Glyma19g32690.1 
          Length = 123

 Score =  109 bits (273), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 51/54 (94%), Positives = 54/54 (100%)

Query: 1   RKSPCGEGTNTWDRFELRVHKRVIDLFSSPEVVKQITSITIEPGVEVEVTIADS 54
           RKSPCGEGTNTWDRFELRVHKRVIDL+SSP+VVKQITSITIEPGVEVEVTIAD+
Sbjct: 70  RKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 123


>Glyma03g29800.1 
          Length = 123

 Score =  109 bits (273), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 51/54 (94%), Positives = 54/54 (100%)

Query: 1   RKSPCGEGTNTWDRFELRVHKRVIDLFSSPEVVKQITSITIEPGVEVEVTIADS 54
           RKSPCGEGTNTWDRFELRVHKRVIDL+SSP+VVKQITSITIEPGVEVEVTIAD+
Sbjct: 70  RKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 123


>Glyma11g00450.1 
          Length = 122

 Score =  109 bits (273), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 50/54 (92%), Positives = 54/54 (100%)

Query: 1   RKSPCGEGTNTWDRFELRVHKRVIDLFSSPEVVKQITSITIEPGVEVEVTIADS 54
           RKSPCGEGTNTWDRFELRVHKR+IDL+SSP+VVKQITSITIEPGVEVEVTIAD+
Sbjct: 69  RKSPCGEGTNTWDRFELRVHKRIIDLYSSPDVVKQITSITIEPGVEVEVTIADA 122


>Glyma03g29810.1 
          Length = 123

 Score =  109 bits (273), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 51/54 (94%), Positives = 54/54 (100%)

Query: 1   RKSPCGEGTNTWDRFELRVHKRVIDLFSSPEVVKQITSITIEPGVEVEVTIADS 54
           RKSPCGEGTNTWDRFELRVHKRVIDL+SSP+VVKQITSITIEPGVEVEVTIAD+
Sbjct: 70  RKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 123


>Glyma12g00610.1 
          Length = 64

 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/54 (94%), Positives = 54/54 (100%)

Query: 1  RKSPCGEGTNTWDRFELRVHKRVIDLFSSPEVVKQITSITIEPGVEVEVTIADS 54
          RKSPCGEGTNTWDRFELRVHKRVIDL+SSP+VVKQITSITIEPGVEVEVTIAD+
Sbjct: 11 RKSPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 64


>Glyma01g45270.1 
          Length = 84

 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 51/54 (94%), Positives = 53/54 (98%)

Query: 1  RKSPCGEGTNTWDRFELRVHKRVIDLFSSPEVVKQITSITIEPGVEVEVTIADS 54
          RKSPCGEGTNTWDRFELRVHKRVIDL SSP+VVKQITSITIEPGVEVEVTIAD+
Sbjct: 31 RKSPCGEGTNTWDRFELRVHKRVIDLHSSPDVVKQITSITIEPGVEVEVTIADA 84