Jatropha Genome Database

JcCA0301151.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0301151.20 + phase: 0 /partial
         (247 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g27500.1                                                       100   3e-21
Glyma15g11480.1                                                        95   7e-20

>Glyma13g27500.1 
          Length = 1455

 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 85/167 (50%), Gaps = 15/167 (8%)

Query: 49  FNPFLKGTXXXXXXXXXXXXVEGLDGN-----------SSKPTTGEVRNYAVGDSEHGEE 97
           FNPFLK T            V+GLDGN            SK TT E + Y V D+EHGEE
Sbjct: 54  FNPFLKETLSQEASSSLSSEVDGLDGNVVTSGPSGGSGLSKVTTKE-QIYTVVDTEHGEE 112

Query: 98  VVMRTAFSSESEKETQSSIHRRSKRKSDFVSQLENVSVRQKENSFSKPSMNLDDEDAIWK 157
            ++  + S  S+ E     H      +D       +S + K  S   P +++D+EDAI  
Sbjct: 113 EIILQSSSMISQSEINQEKHNDLTSATDGNGSRTELSNKTKSWS---PVIDIDNEDAICM 169

Query: 158 RTRARYSLASFTLDELETFLQXXXXXXXXXXXXXXXXYRKFLAAVLQ 204
           RTRARYSLASFTLD+LETFLQ                Y+KFLAAVLQ
Sbjct: 170 RTRARYSLASFTLDQLETFLQETDDDDDLQNADDEEEYKKFLAAVLQ 216


>Glyma15g11480.1 
          Length = 1439

 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 86/168 (51%), Gaps = 16/168 (9%)

Query: 49  FNPFLKGTXXXXXXXXXXXXVEGLDGNS-----------SKPTTGEVRNYAVGDSEHGEE 97
           FNPFLK T            V+GLDGN            SK TT E +   V  +EHGEE
Sbjct: 50  FNPFLKETLSQEASSSLSSEVDGLDGNVVTSGPSGGSELSKVTTKE-QICTVVHNEHGEE 108

Query: 98  VVMRTAFSSESEKETQSSIHRRSKRKSDF-VSQLENVSVRQKENSFSKPSMNLDDEDAIW 156
            ++  + S  S+ E     H      +D   S++  +S + K  S   P +++D+EDAI 
Sbjct: 109 EIILQSSSMISQSEINQEKHNDLTSVTDGNGSRIGELSNKIKSRS---PVIDIDNEDAIC 165

Query: 157 KRTRARYSLASFTLDELETFLQXXXXXXXXXXXXXXXXYRKFLAAVLQ 204
            RTRARYSLASFTLDELETFLQ                Y+KFLAAVLQ
Sbjct: 166 MRTRARYSLASFTLDELETFLQETDDDDDLQNADDEEEYKKFLAAVLQ 213