Jatropha Genome Database

JcCA0297821.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297821.20 - phase: 0 /partial
         (93 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g05890.1                                                       130   4e-31
Glyma11g13910.1                                                       125   1e-29

>Glyma12g05890.1 
          Length = 413

 Score =  130 bits (326), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/76 (88%), Positives = 72/76 (94%)

Query: 1   VVGKKYIRLYPASLSEELYPYSETMLHNSSQVDLDNMDEKEFPKVHDLEFLDCILEEGEM 60
           VVGKKYIRLY +SLSEEL P+S TMLHNSSQVDLD+MDEK+FPKV DLEF+DCILEEGEM
Sbjct: 321 VVGKKYIRLYSSSLSEELSPHSGTMLHNSSQVDLDDMDEKKFPKVQDLEFVDCILEEGEM 380

Query: 61  LYIPPKWWHYVRSLTT 76
           LYIPPKWWHYVRSLTT
Sbjct: 381 LYIPPKWWHYVRSLTT 396


>Glyma11g13910.1 
          Length = 214

 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 71/76 (93%)

Query: 1   VVGKKYIRLYPASLSEELYPYSETMLHNSSQVDLDNMDEKEFPKVHDLEFLDCILEEGEM 60
           VVGKKYIRLY +SLSEEL P+S TMLHNSSQVDLD++DE +FPKV DLEF+DCILEEGEM
Sbjct: 122 VVGKKYIRLYSSSLSEELSPHSGTMLHNSSQVDLDDIDENKFPKVQDLEFVDCILEEGEM 181

Query: 61  LYIPPKWWHYVRSLTT 76
           LYIPPKWWHYVRSLTT
Sbjct: 182 LYIPPKWWHYVRSLTT 197