Jatropha Genome Database

JcCA0297121.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297121.20 - phase: 2 /partial
         (97 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g01270.1                                                       108   2e-24
Glyma15g12100.1                                                       107   3e-24
Glyma09g01270.2                                                        47   3e-06

>Glyma09g01270.1 
          Length = 421

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/63 (77%), Positives = 54/63 (85%)

Query: 1   TINGCNLRPGDLLGTGTISGPEPESYGCLLELTWNGQKPLSLNGATRKFLEDGDEVIFSG 60
           TINGCNLRPGDLLGTGT+SGPEPES  CLLELTWNGQ  +S+N   RKFLEDGDEVI +G
Sbjct: 339 TINGCNLRPGDLLGTGTVSGPEPESRACLLELTWNGQNTVSVNELNRKFLEDGDEVILTG 398

Query: 61  FSK 63
           + K
Sbjct: 399 YCK 401


>Glyma15g12100.1 
          Length = 421

 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 54/63 (85%)

Query: 1   TINGCNLRPGDLLGTGTISGPEPESYGCLLELTWNGQKPLSLNGATRKFLEDGDEVIFSG 60
           TINGCNLRPGDLLGTGT+SGPEPES  CLLELTWNGQ  + +NG  +KFLEDGDEVI +G
Sbjct: 339 TINGCNLRPGDLLGTGTVSGPEPESRACLLELTWNGQNAVPVNGLNKKFLEDGDEVILTG 398

Query: 61  FSK 63
           + K
Sbjct: 399 YCK 401


>Glyma09g01270.2 
          Length = 370

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/21 (95%), Positives = 21/21 (100%)

Query: 1   TINGCNLRPGDLLGTGTISGP 21
           TINGCNLRPGDLLGTGT+SGP
Sbjct: 339 TINGCNLRPGDLLGTGTVSGP 359