Jatropha Genome Database

JcCA0296711.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296711.20 + phase: 0 /pseudo/partial
         (313 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g30960.1                                                       427   e-120

>Glyma07g30960.1 
          Length = 447

 Score =  427 bits (1097), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/293 (69%), Positives = 245/293 (83%), Gaps = 14/293 (4%)

Query: 22  QDYSWPLIRFDLPPRRIHHFYKQFRTSSNANNFLKGVKWSPDGSCFLTSTEDNTLRLFSL 81
           ++YS+P++RFD+ P R +HF++QF T SN NNF K VKWSPDGSCFLTS++DNTLRLF+ 
Sbjct: 41  EEYSFPVLRFDVSPHRTYHFHRQFITPSNPNNFFKAVKWSPDGSCFLTSSDDNTLRLFAP 100

Query: 82  PD---------DGSGSDSNACSINVDEDSYDASLVVNEGESVYDFCWYPYMTASEPVSCV 132
           P           G G  ++  S+ V  DS+ A++V++EGES++DFCWYPYM++S+ V+ V
Sbjct: 101 PGTESDAPVAASGHGDGNHESSLFV-ADSFAANVVMHEGESIHDFCWYPYMSSSDLVTNV 159

Query: 133 FASTTRDHPIHLWDASSGLLRCTYRAYDAVDEITAAFSIAFNPAGTKIFAGYNKSVRVFD 192
           FA+TTRDHPIHLWDA+SG LRCTYRAYDA+DEITAAFSIAFNPAGTKIFAGYNK +R+FD
Sbjct: 160 FATTTRDHPIHLWDATSGQLRCTYRAYDAMDEITAAFSIAFNPAGTKIFAGYNKCIRLFD 219

Query: 193 IHRPGRDFEQYSTLQGNKEGQTGIISAIAVSPTRSGMLATGSYSQTAAIFREDNMELLYV 252
           +HRPGRDFE YST++  KEGQTGIISA+A SP  SGMLA GSY+QT AI+REDNMELLY 
Sbjct: 220 LHRPGRDFELYSTVKDKKEGQTGIISAMAFSPFPSGMLALGSYNQTTAIYREDNMELLYF 279

Query: 253 LHGQEGGITHVQFSKDGNYLYTGGRKDPYILCWDLRKTVEVVYK*VFYLSRSS 305
           LHGQEGGITHVQFS+DGNYLYTGGRKDPYILCWD+RK+V+ VYK    L RSS
Sbjct: 280 LHGQEGGITHVQFSRDGNYLYTGGRKDPYILCWDVRKSVDCVYK----LYRSS 328