Jatropha Genome Database

JcCA0296141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0296141.10 - phase: 1 /pseudo/partial
         (92 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g40130.3                                                       110   2e-25
Glyma07g40130.1                                                       110   2e-25
Glyma17g00660.1                                                       109   5e-25

>Glyma07g40130.3 
          Length = 286

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/82 (68%), Positives = 62/82 (75%)

Query: 9   PESMGCASDHMXXXXXXXXXXFVWSCKALVSEIKASHKEMERMLQEQRXTSFQGRLLKHN 68
           P+     SDH           F+WSCKALV+EIKAS KE+ERMLQEQR TSFQGRLLKHN
Sbjct: 205 PKVWVVTSDHCHQQAAHGAGAFIWSCKALVTEIKASQKEVERMLQEQRSTSFQGRLLKHN 264

Query: 69  LDSEVVDALKDLRNKLAENESK 90
           LD+EVVDALKDLR KL+ENE K
Sbjct: 265 LDAEVVDALKDLRQKLSENELK 286


>Glyma07g40130.1 
          Length = 286

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/82 (68%), Positives = 62/82 (75%)

Query: 9   PESMGCASDHMXXXXXXXXXXFVWSCKALVSEIKASHKEMERMLQEQRXTSFQGRLLKHN 68
           P+     SDH           F+WSCKALV+EIKAS KE+ERMLQEQR TSFQGRLLKHN
Sbjct: 205 PKVWVVTSDHCHQQAAHGAGAFIWSCKALVTEIKASQKEVERMLQEQRSTSFQGRLLKHN 264

Query: 69  LDSEVVDALKDLRNKLAENESK 90
           LD+EVVDALKDLR KL+ENE K
Sbjct: 265 LDAEVVDALKDLRQKLSENELK 286


>Glyma17g00660.1 
          Length = 128

 Score =  109 bits (273), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 56/82 (68%), Positives = 62/82 (75%)

Query: 9   PESMGCASDHMXXXXXXXXXXFVWSCKALVSEIKASHKEMERMLQEQRXTSFQGRLLKHN 68
           P+     SDH           F+WSCKALV+EIKAS KE+ERMLQEQR TSFQGRLLKHN
Sbjct: 47  PKVWVVTSDHCHQQAAHGAGAFIWSCKALVTEIKASQKEVERMLQEQRSTSFQGRLLKHN 106

Query: 69  LDSEVVDALKDLRNKLAENESK 90
           LD+EVVDALKDLR KL+ENE K
Sbjct: 107 LDAEVVDALKDLRLKLSENELK 128