Jatropha Genome Database

JcCA0294381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0294381.10 + phase: 0 /partial
         (109 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g36360.1                                                        86   1e-17
Glyma11g09080.1                                                        80   7e-16

>Glyma01g36360.1 
          Length = 326

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 59/107 (55%)

Query: 2   LGRFKVMELFEGQVIGLWQCMFAFHADXXXXXXXXXXXXXXXRNPKLKSIPTLANDLQLI 61
           L + +V E+ EG   G+W C+FAFHAD               RNPKLK IP L +DL +I
Sbjct: 60  LVKSRVSEVCEGHRNGVWLCVFAFHADHTPQFCRIPPVLLVTRNPKLKMIPNLLDDLHVI 119

Query: 62  FKLSSRTADGESLQFLSKGKCERARGDCCQSKKSLPVLDQDLNCLPY 108
           +KL  +  D +  Q  +  + +    +C  S K  PVLDQDLNCLPY
Sbjct: 120 YKLDRKEEDSDIAQDYTGEERQGNSNNCQPSWKVFPVLDQDLNCLPY 166


>Glyma11g09080.1 
          Length = 301

 Score = 79.7 bits (195), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 46/108 (42%), Positives = 61/108 (56%), Gaps = 2/108 (1%)

Query: 2   LGRFKVMELFEGQVIGLWQCMFAFHADXXXXXXXXXXXXXXXRNPKLKSIPTLANDLQLI 61
           L + +V E+ EG   G+W C+FAFHAD               RNPKLK IP L +DL +I
Sbjct: 35  LVKSRVSEVCEGHRNGVWLCVFAFHADHTPQFCRIPRLLLVTRNPKLKMIPNLLDDLHMI 94

Query: 62  FKLSSRTADGESLQFLSKGKCERARGDCCQ-SKKSLPVLDQDLNCLPY 108
           +KL+ +  D +  Q  S G+  +   +  Q S+K  PVLDQDLN LPY
Sbjct: 95  YKLNRKEEDRDIAQD-STGEERQGHSNNFQPSRKVFPVLDQDLNFLPY 141