Jatropha Genome Database

JcCA0293801.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0293801.20 + phase: 0 
         (145 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g20740.1                                                        91   5e-19

>Glyma18g20740.1 
          Length = 225

 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 79/141 (56%), Gaps = 19/141 (13%)

Query: 1   MAGNQPL-----QNSKRGILEPVKELWQIHYSRFFSFPRLSSTCAILKPLSSRCIKKNPH 55
           MAGN  +     +NS R     ++E W+I ++RF  +P L  +  +L PL  R    +P 
Sbjct: 1   MAGNLAVIEHSNKNSAR-----LREQWEICFARFIPYPTLPPSSDLL-PLPPRLRNLSPR 54

Query: 56  GLHGKWVSSSSMASLHLKNDYADARGFVLVVSFQGKVYEEHHIAKLNFSWPQVSCLDECP 115
           G    W+SSSS+A L L   +         VSF   + EEH++ KL+F+WPQVSC+   P
Sbjct: 55  G---NWISSSSVAFLRLSLSHLLL-----TVSFNAALLEEHYVTKLHFTWPQVSCVSGYP 106

Query: 116 IRGSRVVFASYRDSLGQASFL 136
            RG R V  SYRDSLG+A FL
Sbjct: 107 ARGIRTVIVSYRDSLGEARFL 127