Jatropha Genome Database

JcCA0289001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0289001.10 + phase: 0 /partial
         (190 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g03040.1                                                       323   6e-89
Glyma07g35190.1                                                        84   1e-16

>Glyma20g03040.1 
          Length = 651

 Score =  323 bits (828), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 154/188 (81%), Positives = 170/188 (90%)

Query: 1   DLNIGIALWLAASGDGWVYKGMNNNADENQQRLRYKSKARIVLVGSGADEQCAGYGRHRT 60
           DLNIGIALWLAA GDGWV      + D N  R++YKS A+I+LVGSGADEQCAGYGRHRT
Sbjct: 458 DLNIGIALWLAAGGDGWVSDANTYDNDGNHVRIKYKSNAKILLVGSGADEQCAGYGRHRT 517

Query: 61  KYRCGSWLGLHEEMKLDMQRIWKRNMGRDDRCIADNGKEARFPFLDEDVIRTLLDIPLWK 120
            YR GSWLGLHEEM+LDMQRIW+RN+GRDDRCIADNGKEARFPFLDEDVIR LL+IPLW+
Sbjct: 518 SYRRGSWLGLHEEMRLDMQRIWRRNLGRDDRCIADNGKEARFPFLDEDVIRLLLNIPLWE 577

Query: 121 VANLNQPSGTGDKKILREVAWMLGLHEAAILPKRAIQFGSRIARESNRKNFGSNRAANQA 180
           VANL+QPSG GDK+ILREVA +LGL+EAA+LPKRAIQFGSRIARESNRKNFGSNRAANQA
Sbjct: 578 VANLDQPSGIGDKRILREVAELLGLYEAAVLPKRAIQFGSRIARESNRKNFGSNRAANQA 637

Query: 181 SAGSVVIN 188
           SAGSV I+
Sbjct: 638 SAGSVTIH 645


>Glyma07g35190.1 
          Length = 109

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/47 (87%), Positives = 45/47 (95%)

Query: 138 EVAWMLGLHEAAILPKRAIQFGSRIARESNRKNFGSNRAANQASAGS 184
           +VA +LGL+EAA+LPKRAI FGSRIARESNRKNFGSNRAANQASAGS
Sbjct: 6   KVAELLGLYEAAVLPKRAILFGSRIARESNRKNFGSNRAANQASAGS 52