Jatropha Genome Database

JcCA0287661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0287661.10 - phase: 0 /pseudo
         (74 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g29710.1                                                        47   4e-06

>Glyma08g29710.1 
          Length = 393

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/42 (57%), Positives = 29/42 (69%)

Query: 4  LHSDLITEILLFLPVKPLWHLRCVSKQFCNLIDSPNFKKAHL 45
          L  +LI EIL +LPVKPL   RCVSK + +LI  P+F K HL
Sbjct: 9  LPQELIVEILSWLPVKPLMRFRCVSKAWYSLIFHPSFIKLHL 50