Jatropha Genome Database

JcCA0286161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0286161.20 - phase: 0 /pseudo/partial
         (111 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g37650.1                                                        56   9e-09
Glyma10g29650.1                                                        52   1e-07

>Glyma20g37650.1 
          Length = 279

 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/52 (50%), Positives = 32/52 (61%)

Query: 60  GFNIEAYDDVYTQQLGWNNPGATGESADVEPSVAIPAVPYLYSFDDDSDETD 111
           G NIEAYD VY Q+LGW++PG   E +  E       +PYLY FD D DE +
Sbjct: 228 GMNIEAYDAVYIQRLGWSSPGVNTEVSQSELVDRATVIPYLYLFDGDFDENE 279


>Glyma10g29650.1 
          Length = 281

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 31/52 (59%)

Query: 60  GFNIEAYDDVYTQQLGWNNPGATGESADVEPSVAIPAVPYLYSFDDDSDETD 111
           G NIEAYD  Y Q+LGW++PG   E +  E       +PY++ FD D DE +
Sbjct: 230 GMNIEAYDAAYIQRLGWSSPGVNTEVSHSELVDRSTVIPYMHLFDGDFDENE 281