Jatropha Genome Database

JcCA0285981.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0285981.30 + phase: 0 /pseudo/partial
         (221 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g06540.1                                                        49   3e-06
Glyma06g06570.1                                                        49   5e-06
Glyma06g06570.2                                                        49   6e-06

>Glyma04g06540.1 
          Length = 669

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 18/106 (16%)

Query: 22  SQIKIAEWNPEKDLLAMVTEDSKVLLHRFNWQRLWTISPGKC----------ITSLCWRP 71
           S +   +W+   + +A  + D  V        RLW +  G+C          I SL   P
Sbjct: 503 SDVDCVQWHANCNYIATGSSDKTV--------RLWDVQSGECVRVFVGHRVMILSLAMSP 554

Query: 72  DGKAIAVGLEDGTISLHDVENGKLLRSLKSHTVAVVCLNWEEDGQL 117
           DG+ +A G EDGTI + D+ +G+ L  L  HT  V  L +  +G +
Sbjct: 555 DGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSI 600


>Glyma06g06570.1 
          Length = 663

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 18/106 (16%)

Query: 22  SQIKIAEWNPEKDLLAMVTEDSKVLLHRFNWQRLWTISPGKC----------ITSLCWRP 71
           S +   +W+   + +A  + D  V        RLW +  G+C          I SL   P
Sbjct: 498 SDVDCVQWHANCNYIATGSSDKTV--------RLWDVQSGECVRVFVGHRGMILSLAMSP 549

Query: 72  DGKAIAVGLEDGTISLHDVENGKLLRSLKSHTVAVVCLNWEEDGQL 117
           DG+ +A G EDGTI + D+ +G+ L  L  HT  V  L +  +G +
Sbjct: 550 DGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSV 595


>Glyma06g06570.2 
          Length = 566

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 18/106 (16%)

Query: 22  SQIKIAEWNPEKDLLAMVTEDSKVLLHRFNWQRLWTISPGKC----------ITSLCWRP 71
           S +   +W+   + +A  + D  V        RLW +  G+C          I SL   P
Sbjct: 401 SDVDCVQWHANCNYIATGSSDKTV--------RLWDVQSGECVRVFVGHRGMILSLAMSP 452

Query: 72  DGKAIAVGLEDGTISLHDVENGKLLRSLKSHTVAVVCLNWEEDGQL 117
           DG+ +A G EDGTI + D+ +G+ L  L  HT  V  L +  +G +
Sbjct: 453 DGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSV 498