Jatropha Genome Database

JcCA0285211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0285211.10 + phase: 0 
         (116 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g42370.1                                                       144   2e-35

>Glyma06g42370.1 
          Length = 565

 Score =  144 bits (364), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/116 (62%), Positives = 89/116 (76%), Gaps = 1/116 (0%)

Query: 1   MADRDRGDWEFYLRTLSSSARDSNLASDPASDPSLLQSIKRLYELCKQENSEDLVARVYP 60
           M++RD   W+F+LR LS+S RDSN A+DPASD SLL S+K+L+E+CK E SEDLVARVYP
Sbjct: 1   MSERDIA-WDFHLRKLSASGRDSNTANDPASDSSLLPSVKKLHEICKNEYSEDLVARVYP 59

Query: 61  QINRLFQRSVNSLAQSKSSYGXXXXXXXXXXXXXGEVVLHDADPSLKTFFRSCLSR 116
            IN++FQR+V SL+QS++S G             GEVVLHDADPSL+TFFR CLSR
Sbjct: 60  SINKIFQRAVASLSQSRTSNGLLLLEILQFYLDFGEVVLHDADPSLRTFFRLCLSR 115