Jatropha Genome Database

JcCA0283321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0283321.10 - phase: 0 /partial
         (113 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g33710.1                                                        79   1e-15
Glyma15g39070.1                                                        71   2e-13

>Glyma13g33710.1 
          Length = 426

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/126 (46%), Positives = 68/126 (53%), Gaps = 15/126 (11%)

Query: 1   MMSMTCRSIDFGRTLLDLAACGCSSNAS-IDRYSVRNYAKFASXXXXXXXXXX------- 52
           MMS+T +SIDF     +L +CGCSSNAS  DRY+VRNYAK  S                 
Sbjct: 1   MMSVTGKSIDFAGK--NLVSCGCSSNASSFDRYTVRNYAKLNSNNSKGCGRDHGARKLVC 58

Query: 53  -XXXXXXXXVSSTKTPETLPNG---VAQGPVTLLDLK-ESKGPISLKNLFEVVADDLQTL 107
                    VSS KT +   NG     +G  T LDLK  S+ PIS   LFEVVADDL TL
Sbjct: 59  CKKRSTHCRVSSMKTAQPTVNGGTHAFEGLTTGLDLKGYSEDPISPARLFEVVADDLLTL 118

Query: 108 NHNLRS 113
           N NL+S
Sbjct: 119 NKNLQS 124


>Glyma15g39070.1 
          Length = 423

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 64/125 (51%), Gaps = 16/125 (12%)

Query: 1   MMSMTCRSIDF-GRTLLDLAACGCSSNASIDRYSVRNYAKFASXXXXXXXXXX------- 52
           MMS+T + IDF G+ L+     GCSSNAS D Y+VRNYAK  S                 
Sbjct: 1   MMSVTGKGIDFAGKNLVS----GCSSNASFDWYTVRNYAKANSNNSNGCGRGHGRKLVCC 56

Query: 53  XXXXXXXXVSSTKTPETLPNG---VAQGPVTLLDLK-ESKGPISLKNLFEVVADDLQTLN 108
                   VSS KT +   NG     +G  T LDLK  S+ PIS    FE VADDL TLN
Sbjct: 57  KRRSTQCRVSSMKTAQPTVNGGTHAIEGLTTGLDLKGYSEAPISPARFFEAVADDLLTLN 116

Query: 109 HNLRS 113
            NL+S
Sbjct: 117 KNLQS 121