Jatropha Genome Database

JcCA0283211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0283211.10 + phase: 0 /pseudo/partial
         (271 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g32360.1                                                       243   2e-64

>Glyma19g32360.1 
          Length = 1076

 Score =  243 bits (620), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 135/233 (57%), Positives = 161/233 (69%), Gaps = 12/233 (5%)

Query: 15  NRDVNNFDDCVAAFLLQRAFNMYEFEDVRKLAAELCGRIHPQVLFPIVSSLLEDAAKCED 74
           +RD +   DC+AAFLL RAF  +EFE+VRKL+AELCGRIHPQVL P V SLLE A   ++
Sbjct: 746 SRDTDIDYDCIAAFLLNRAFCEFEFEEVRKLSAELCGRIHPQVLLPFVCSLLERAVDSKN 805

Query: 75  VLIIKACLFAICTSLVVRGRESVSHPIIIQIRKTIETVLLWPSLDGDEVSKAQHGCIDCL 134
           VL IKACLF+ICTSL+VRG ES+SHP +  IRK IETVLLWP L+ D VSKAQHGCIDCL
Sbjct: 806 VLKIKACLFSICTSLMVRGWESLSHPSMYSIRKMIETVLLWPCLNADSVSKAQHGCIDCL 865

Query: 135 ALMICAELPNLESFKNS--EKFSLLGKTSYAGWYLIPRNSILAYVIHQLTSDKNE-VPVC 191
           ALMICAEL   ES  NS  +    LGK           NS++ YVI+Q  ++KNE     
Sbjct: 866 ALMICAELQAKESINNSIPDTVRALGKKG---------NSVVTYVINQFFNNKNEQTSTP 916

Query: 192 TLTSENCEHDAPVLCSFRLCMANVLLSACQKLSDSGKKLFARETLPRLISSVE 244
               EN E  A V  SF LCM NVL+S CQK+S+S KK FA + +P L+ S+E
Sbjct: 917 EFGDENSEFVAAVSLSFCLCMGNVLISTCQKISESCKKPFAAQVIPFLLHSLE 969