Jatropha Genome Database
- JcCA0282311.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0282311.10 + phase: 0 /pseudo
(72 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma08g18750.3 95 2e-20
Glyma08g18750.1 95 2e-20
Glyma08g18750.2 94 4e-20
Glyma15g40140.1 93 6e-20
Glyma08g10250.2 89 8e-19
Glyma08g10250.1 89 8e-19
Glyma08g10290.1 88 2e-18
Glyma05g27290.1 87 3e-18
Glyma05g27300.1 87 3e-18
Glyma08g10230.1 87 5e-18
Glyma08g10240.1 84 4e-17
Glyma06g36660.1 66 7e-12
Glyma08g10280.1 59 1e-09
>Glyma08g18750.3
Length = 371
Score = 94.7 bits (234), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/46 (91%), Positives = 44/46 (95%)
Query: 1 MEITNVMEYEEIARQKLPKMVFDYYASGAEDQWTLKENRNAFSRIL 46
MEITNV EYE IA+QKLPKMVFDYYASGAEDQWTL+ENRNAFSRIL
Sbjct: 1 MEITNVSEYEAIAKQKLPKMVFDYYASGAEDQWTLQENRNAFSRIL 46
>Glyma08g18750.1
Length = 371
Score = 94.7 bits (234), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/46 (91%), Positives = 44/46 (95%)
Query: 1 MEITNVMEYEEIARQKLPKMVFDYYASGAEDQWTLKENRNAFSRIL 46
MEITNV EYE IA+QKLPKMVFDYYASGAEDQWTL+ENRNAFSRIL
Sbjct: 1 MEITNVSEYEAIAKQKLPKMVFDYYASGAEDQWTLQENRNAFSRIL 46
>Glyma08g18750.2
Length = 297
Score = 93.6 bits (231), Expect = 4e-20, Method: Composition-based stats.
Identities = 42/46 (91%), Positives = 44/46 (95%)
Query: 1 MEITNVMEYEEIARQKLPKMVFDYYASGAEDQWTLKENRNAFSRIL 46
MEITNV EYE IA+QKLPKMVFDYYASGAEDQWTL+ENRNAFSRIL
Sbjct: 1 MEITNVSEYEAIAKQKLPKMVFDYYASGAEDQWTLQENRNAFSRIL 46
>Glyma15g40140.1
Length = 371
Score = 92.8 bits (229), Expect = 6e-20, Method: Composition-based stats.
Identities = 41/46 (89%), Positives = 43/46 (93%)
Query: 1 MEITNVMEYEEIARQKLPKMVFDYYASGAEDQWTLKENRNAFSRIL 46
MEITNV EYE IA+QKLPKM FDYYASGAEDQWTL+ENRNAFSRIL
Sbjct: 1 MEITNVSEYEAIAKQKLPKMAFDYYASGAEDQWTLQENRNAFSRIL 46
>Glyma08g10250.2
Length = 370
Score = 89.4 bits (220), Expect = 8e-19, Method: Composition-based stats.
Identities = 39/44 (88%), Positives = 42/44 (95%)
Query: 3 ITNVMEYEEIARQKLPKMVFDYYASGAEDQWTLKENRNAFSRIL 46
ITNV EYE IA++KLPKMV+DYYASGAEDQWTLKENRNAFSRIL
Sbjct: 6 ITNVTEYEAIAKEKLPKMVYDYYASGAEDQWTLKENRNAFSRIL 49
>Glyma08g10250.1
Length = 370
Score = 89.4 bits (220), Expect = 8e-19, Method: Composition-based stats.
Identities = 39/44 (88%), Positives = 42/44 (95%)
Query: 3 ITNVMEYEEIARQKLPKMVFDYYASGAEDQWTLKENRNAFSRIL 46
ITNV EYE IA++KLPKMV+DYYASGAEDQWTLKENRNAFSRIL
Sbjct: 6 ITNVTEYEAIAKEKLPKMVYDYYASGAEDQWTLKENRNAFSRIL 49
>Glyma08g10290.1
Length = 370
Score = 88.2 bits (217), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/44 (86%), Positives = 42/44 (95%)
Query: 3 ITNVMEYEEIARQKLPKMVFDYYASGAEDQWTLKENRNAFSRIL 46
+TNV EYE IA++KLPKMV+DYYASGAEDQWTLKENRNAFSRIL
Sbjct: 6 MTNVTEYEAIAKEKLPKMVYDYYASGAEDQWTLKENRNAFSRIL 49
>Glyma05g27290.1
Length = 403
Score = 87.4 bits (215), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/44 (86%), Positives = 42/44 (95%)
Query: 3 ITNVMEYEEIARQKLPKMVFDYYASGAEDQWTLKENRNAFSRIL 46
ITNV EYE IA++KLPKMV+D+YASGAEDQWTLKENRNAFSRIL
Sbjct: 2 ITNVTEYEAIAKEKLPKMVYDFYASGAEDQWTLKENRNAFSRIL 45
>Glyma05g27300.1
Length = 368
Score = 87.4 bits (215), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/44 (86%), Positives = 41/44 (93%)
Query: 3 ITNVMEYEEIARQKLPKMVFDYYASGAEDQWTLKENRNAFSRIL 46
ITNV EYE IA++KLPKMV+DYYASGAEDQWTL ENRNAFSRIL
Sbjct: 4 ITNVTEYEAIAKEKLPKMVYDYYASGAEDQWTLNENRNAFSRIL 47
>Glyma08g10230.1
Length = 407
Score = 86.7 bits (213), Expect = 5e-18, Method: Composition-based stats.
Identities = 38/44 (86%), Positives = 42/44 (95%)
Query: 3 ITNVMEYEEIARQKLPKMVFDYYASGAEDQWTLKENRNAFSRIL 46
ITNV EYE IA++KLPKMV+DYYASGAEDQWTLKEN+NAFSRIL
Sbjct: 43 ITNVNEYEAIAKEKLPKMVYDYYASGAEDQWTLKENQNAFSRIL 86
>Glyma08g10240.1
Length = 92
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 49/68 (72%), Gaps = 4/68 (5%)
Query: 3 ITNVMEYEEIARQKLPKMVFDYYASGAEDQWTLKENRNAFSRIL----*AHSYSRLNNRG 58
ITNV EYE IA++ LPKMV+D+YASGAEDQWTLKENRNAFSRIL S+++
Sbjct: 6 ITNVTEYEAIAKENLPKMVYDFYASGAEDQWTLKENRNAFSRILFRLRILVDLSKIDLTT 65
Query: 59 YSFGFDIS 66
GF IS
Sbjct: 66 TVLGFKIS 73
>Glyma06g36660.1
Length = 64
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 34/42 (80%)
Query: 1 MEITNVMEYEEIARQKLPKMVFDYYASGAEDQWTLKENRNAF 42
MEITNV EY+ I +Q+LPKM+FDYY + EDQW ++EN+N F
Sbjct: 1 MEITNVSEYKSIVKQQLPKMMFDYYVACVEDQWIMEENKNVF 42
>Glyma08g10280.1
Length = 256
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/27 (92%), Positives = 27/27 (100%)
Query: 20 MVFDYYASGAEDQWTLKENRNAFSRIL 46
MV+D+YASGAEDQWTLKENRNAFSRIL
Sbjct: 1 MVYDFYASGAEDQWTLKENRNAFSRIL 27