Jatropha Genome Database

JcCA0281241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0281241.10 - phase: 0 /partial
         (108 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g29150.1                                                       170   3e-43
Glyma03g07350.1                                                        55   1e-08

>Glyma01g29150.1 
          Length = 703

 Score =  170 bits (431), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/101 (80%), Positives = 88/101 (87%)

Query: 1   APSMRQLHLHVISQDFNSDNLKNKKHWNSFTTAFFRDSVDVIEEIRNHGKATLKDDDSYL 60
           APSMRQLHLHVISQDF S +LKNKKHWNSF TAFFRDSVDVI+EI + GKA LKDDD  L
Sbjct: 592 APSMRQLHLHVISQDFESIHLKNKKHWNSFNTAFFRDSVDVIDEISSDGKAKLKDDDKLL 651

Query: 61  STELRCHRCRSAHPNIPRLKSHIKNCRAPFPPILLENCRLV 101
           S ELRCHRCRSAHPNIPRLKSHI NC++PFP  LL++ RLV
Sbjct: 652 SMELRCHRCRSAHPNIPRLKSHISNCQSPFPAHLLQHGRLV 692


>Glyma03g07350.1 
          Length = 581

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 29/38 (76%)

Query: 63  ELRCHRCRSAHPNIPRLKSHIKNCRAPFPPILLENCRL 100
           +L  H CRS  PNIPRLKSHI +C++PFP  LL+N RL
Sbjct: 544 QLHLHICRSGPPNIPRLKSHISSCQSPFPAHLLQNGRL 581