Jatropha Genome Database

JcCA0281201.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0281201.20 - phase: 0 /partial/short
         (34 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g15140.1                                                        55   1e-08
Glyma04g39730.1                                                        55   3e-08

>Glyma06g15140.1 
          Length = 568

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 29/34 (85%)

Query: 1   FGNWGWRIPSSMSFDQMAKEAKRLRGLLSMYGRM 34
           FGNWGWRI SS+SFD + +EA RLR +LSMYGR+
Sbjct: 535 FGNWGWRIASSVSFDGLEREADRLREMLSMYGRL 568


>Glyma04g39730.1 
          Length = 550

 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 29/34 (85%)

Query: 1   FGNWGWRIPSSMSFDQMAKEAKRLRGLLSMYGRM 34
           FGNWGWRI SS+SFD + +EA RLR +LSMYGR+
Sbjct: 517 FGNWGWRIGSSVSFDGLEREADRLREMLSMYGRL 550