Jatropha Genome Database

JcCA0280621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0280621.10 + phase: 0 /pseudo/partial
         (238 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g02180.3                                                        91   1e-18
Glyma05g02180.4                                                        86   3e-17
Glyma17g09750.1                                                        84   2e-16
Glyma05g02180.2                                                        79   3e-15
Glyma05g02180.1                                                        79   3e-15
Glyma06g19390.2                                                        71   9e-13
Glyma06g19390.1                                                        70   2e-12

>Glyma05g02180.3 
          Length = 500

 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 61/90 (67%), Gaps = 13/90 (14%)

Query: 121 QKVKEMKSMSMAIHKLEGQANNLGRTSLADQEDYTLSVANHPKQTYVNGKADSDLRSVRS 180
           ++V+EMKSM+ AI +LEGQ            ED  +S  +  KQ  VNGKAD D+ SVRS
Sbjct: 255 KQVQEMKSMTNAIRRLEGQ------------EDLRISQTSS-KQLIVNGKADYDMSSVRS 301

Query: 181 SSPPTSAEPSVAPHPKSYMEIMAMVQRGER 210
           SSPPTS EPS   HPK+Y EIMAMVQRGE+
Sbjct: 302 SSPPTSVEPSSGLHPKAYAEIMAMVQRGEK 331


>Glyma05g02180.4 
          Length = 501

 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 61/91 (67%), Gaps = 14/91 (15%)

Query: 121 QKVKEMKSMSMAIHKLEGQANNLGRTSLADQEDYTLSVANHPKQTYVNGKADSDLRSVRS 180
           ++V+EMKSM+ AI +LEGQ            ED  +S  +  KQ  VNGKAD D+ SVRS
Sbjct: 255 KQVQEMKSMTNAIRRLEGQ------------EDLRISQTSS-KQLIVNGKADYDMSSVRS 301

Query: 181 SSPPTSAEPSVAPHPKSYME-IMAMVQRGER 210
           SSPPTS EPS   HPK+Y E IMAMVQRGE+
Sbjct: 302 SSPPTSVEPSSGLHPKAYAEVIMAMVQRGEK 332


>Glyma17g09750.1 
          Length = 500

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/94 (54%), Positives = 60/94 (63%), Gaps = 17/94 (18%)

Query: 121 QKVKEMKSMSMAIHKLEGQANNLGRTSLADQEDYTLSVANHPKQTYVNGKADSDLRS--- 177
           ++V+EMKSM+ AI +LEGQ            ED  +S  +  KQ  VNGKAD DL S   
Sbjct: 255 KQVQEMKSMTNAIRRLEGQ------------EDLQISQTSS-KQLIVNGKADYDLHSGCH 301

Query: 178 -VRSSSPPTSAEPSVAPHPKSYMEIMAMVQRGER 210
            VR SSPPTS EPS   HPK+Y EIMAMVQRGE+
Sbjct: 302 VVRFSSPPTSVEPSSGLHPKAYAEIMAMVQRGEK 335


>Glyma05g02180.2 
          Length = 512

 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 65/117 (55%), Gaps = 28/117 (23%)

Query: 121 QKVKEMKSMSMAIHKLE-----------------------GQANNLGRTSLADQEDYTLS 157
           ++V+EMKSM+ AI +LE                       GQ       S++ QED  +S
Sbjct: 255 KQVQEMKSMTNAIRRLEVLTATQKFFIFKVLAEYLFLTNCGQNIPSNGVSVSGQEDLRIS 314

Query: 158 VANHPKQTYVNGKADSDLRS----VRSSSPPTSAEPSVAPHPKSYMEIMAMVQRGER 210
             +  KQ  VNGKAD D+ S    VRSSSPPTS EPS   HPK+Y EIMAMVQRGE+
Sbjct: 315 QTSS-KQLIVNGKADYDMSSGCHVVRSSSPPTSVEPSSGLHPKAYAEIMAMVQRGEK 370


>Glyma05g02180.1 
          Length = 514

 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 65/117 (55%), Gaps = 28/117 (23%)

Query: 121 QKVKEMKSMSMAIHKLE-----------------------GQANNLGRTSLADQEDYTLS 157
           ++V+EMKSM+ AI +LE                       GQ       S++ QED  +S
Sbjct: 257 KQVQEMKSMTNAIRRLEVLTATQKFFIFKVLAEYLFLTNCGQNIPSNGVSVSGQEDLRIS 316

Query: 158 VANHPKQTYVNGKADSDLRS----VRSSSPPTSAEPSVAPHPKSYMEIMAMVQRGER 210
             +  KQ  VNGKAD D+ S    VRSSSPPTS EPS   HPK+Y EIMAMVQRGE+
Sbjct: 317 QTSS-KQLIVNGKADYDMSSGCHVVRSSSPPTSVEPSSGLHPKAYAEIMAMVQRGEK 372


>Glyma06g19390.2 
          Length = 367

 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/91 (54%), Positives = 65/91 (71%), Gaps = 5/91 (5%)

Query: 121 QKVKEMKSMSMAIHKLEGQANNLGRTSLADQEDYTLS-VANHPKQTYVNGKADSDLRSVR 179
           ++V+EMK M+ AI +LE      G  S++ QED  ++   +  +Q  VNGK+D + RSVR
Sbjct: 248 KQVQEMKLMTNAIGRLEAS----GGLSVSKQEDRLVTQTGSKTQQLIVNGKSDYESRSVR 303

Query: 180 SSSPPTSAEPSVAPHPKSYMEIMAMVQRGER 210
           SSSPP S EPS APHPKSYMEIMAM+QRGE+
Sbjct: 304 SSSPPVSVEPSSAPHPKSYMEIMAMIQRGEK 334


>Glyma06g19390.1 
          Length = 459

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/91 (54%), Positives = 65/91 (71%), Gaps = 5/91 (5%)

Query: 121 QKVKEMKSMSMAIHKLEGQANNLGRTSLADQEDYTLS-VANHPKQTYVNGKADSDLRSVR 179
           ++V+EMK M+ AI +LE      G  S++ QED  ++   +  +Q  VNGK+D + RSVR
Sbjct: 248 KQVQEMKLMTNAIGRLEAS----GGLSVSKQEDRLVTQTGSKTQQLIVNGKSDYESRSVR 303

Query: 180 SSSPPTSAEPSVAPHPKSYMEIMAMVQRGER 210
           SSSPP S EPS APHPKSYMEIMAM+QRGE+
Sbjct: 304 SSSPPVSVEPSSAPHPKSYMEIMAMIQRGEK 334