Jatropha Genome Database

JcCA0279201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0279201.10 - phase: 0 /partial
         (235 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g24470.1                                                       358   2e-99
Glyma10g42560.1                                                       355   2e-98

>Glyma20g24470.1 
          Length = 1289

 Score =  358 bits (920), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 172/233 (73%), Positives = 201/233 (86%)

Query: 3   VEEEDDEHGCKERVLQKYFLQEWKLVKSLLDDIVSNGRVSDLSSVHKIRSIMDKYQQEGQ 62
           + +EDDE   KE VLQKYFLQEW +VKSLLDDIVSN RVSD SSVH+IRSI+DKYQ++GQ
Sbjct: 1   MNQEDDELESKESVLQKYFLQEWNIVKSLLDDIVSNSRVSDPSSVHRIRSILDKYQEQGQ 60

Query: 63  LLEPYLESIVSPLMSIIRTKTIELGIASDEILQVIKPICIIIYCLVTVGGYKAVIKFFPH 122
           LLEPYLE+IV PLM+I+R++T+ELG+ASDEIL++IKPICII+Y LVTV GYK+VIKFFPH
Sbjct: 61  LLEPYLETIVCPLMNILRSRTLELGVASDEILEIIKPICIIVYTLVTVCGYKSVIKFFPH 120

Query: 123 QVSNLELAVALLDKCHDTASGTSLRQESTGEMEAKCXXXXXXXXXXXXPFDISSVDTSIA 182
           QVS+LELAV+LL+KCH T SGTSLRQESTGEMEAKC            PFDIS+VDTSIA
Sbjct: 121 QVSDLELAVSLLEKCHHTNSGTSLRQESTGEMEAKCVTLLWLYILVLVPFDISTVDTSIA 180

Query: 183 NNNDICKLEPSPLVLRIMKFSKDYLSNAGPMRTMAGLLLSKLLTRPDMPMAFT 235
           NN+++ + E SPLVLRI+ F KDYLS AGPMRTMAGL+LS+LLTRPDMP AFT
Sbjct: 181 NNDNLTEFELSPLVLRIIGFCKDYLSTAGPMRTMAGLVLSRLLTRPDMPKAFT 233


>Glyma10g42560.1 
          Length = 1266

 Score =  355 bits (912), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 171/235 (72%), Positives = 202/235 (85%)

Query: 1   MAVEEEDDEHGCKERVLQKYFLQEWKLVKSLLDDIVSNGRVSDLSSVHKIRSIMDKYQQE 60
           + + +EDDE   KE VLQKYFLQEW +VKSLL DIVS  RVSD SSVH++RSI+DKYQ++
Sbjct: 8   VTMNQEDDELESKESVLQKYFLQEWNIVKSLLHDIVSKSRVSDPSSVHRLRSILDKYQEQ 67

Query: 61  GQLLEPYLESIVSPLMSIIRTKTIELGIASDEILQVIKPICIIIYCLVTVGGYKAVIKFF 120
           GQLLEPYLE+IVSPLM+IIR++T+ELG+ASDE+L++IKPICII+Y LVTV GYK+VIKFF
Sbjct: 68  GQLLEPYLETIVSPLMNIIRSRTLELGVASDEVLEIIKPICIIVYTLVTVCGYKSVIKFF 127

Query: 121 PHQVSNLELAVALLDKCHDTASGTSLRQESTGEMEAKCXXXXXXXXXXXXPFDISSVDTS 180
           PHQVS+LELAV+LL+KCH+T S TSLRQESTGEMEAKC            PFDISSVDTS
Sbjct: 128 PHQVSDLELAVSLLEKCHNTNSVTSLRQESTGEMEAKCVTLLWLYILVLVPFDISSVDTS 187

Query: 181 IANNNDICKLEPSPLVLRIMKFSKDYLSNAGPMRTMAGLLLSKLLTRPDMPMAFT 235
           IANN+++ + E SPLVLRI+ FSKDYLS AGPMRTMAGL+LS+LLTRPDMP AFT
Sbjct: 188 IANNDNLTEFELSPLVLRIIGFSKDYLSTAGPMRTMAGLVLSRLLTRPDMPKAFT 242