Jatropha Genome Database

JcCA0278051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0278051.10 - phase: 0 /pseudo/partial
         (136 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g24560.1                                                        92   2e-19
Glyma08g07750.1                                                        72   1e-13

>Glyma05g24560.1 
          Length = 330

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 37/48 (77%), Positives = 43/48 (89%)

Query: 18  GMCRTGQFDDAFCFFGEMKVKGHPPNRPVYTMLITMCGRAGRYVEAGD 65
            +CR GQFDDAFCFFG+MK K HPPNRP+YTMLITMCGRAG++VEA +
Sbjct: 237 ALCRRGQFDDAFCFFGDMKAKAHPPNRPLYTMLITMCGRAGKFVEAAN 284


>Glyma08g07750.1 
          Length = 227

 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 44/64 (68%), Gaps = 7/64 (10%)

Query: 5   ISHFLVC---MHLXSTGMCRTGQFDDAFCFFGEMKVKGHPPNRPVYTMLITMCGRAGRYV 61
           +++FLVC   + L   G    G     FCFFG+MK K HPPNRP+YTMLITMCGRAG++V
Sbjct: 122 LNNFLVCACYLRLCVAG----GNLMMLFCFFGDMKAKAHPPNRPLYTMLITMCGRAGKFV 177

Query: 62  EAGD 65
           E  +
Sbjct: 178 EVAN 181