Jatropha Genome Database

JcCA0275671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0275671.10 + phase: 0 /pseudo/partial
         (252 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g00510.1                                                       284   8e-77

>Glyma04g00510.1 
          Length = 409

 Score =  284 bits (726), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 139/203 (68%), Positives = 162/203 (79%), Gaps = 10/203 (4%)

Query: 42  RRHGQVDLSVFRDAVQDCLDHDA-KPVHKSEKLKQARNSNDVQVEKYSGLRIRNQLVTPA 100
           R   + D+SVF+ A+QDCL +D  KP +K         + D  +EK+SGLRIRNQL+TPA
Sbjct: 43  RERDKPDMSVFKSALQDCLPYDPPKPTNK------PVINVDSHLEKFSGLRIRNQLLTPA 96

Query: 101 ELSERLSDIRFVRLPAIKNLLVGDTLSGCWATIGVLTEKGNPRTSSVGKSYCIWKIGCLD 160
           EL E  SDIRFVRL  IKN LVGDT+SG WAT+GVLTEKG  +TSS GKSYCIWKIGCLD
Sbjct: 97  ELKEHFSDIRFVRLSVIKNSLVGDTVSGSWATVGVLTEKGTQKTSSTGKSYCIWKIGCLD 156

Query: 161 ENTISLFLFGDAYQQNCKEQAGTVFALFNCTVRRDNAG-GFSLSVYSPNQIIKMGTSIDY 219
           E T+SLFLFGDAYQ N +EQAGTVFALFN TVR+DNAG GFSLS+YS  QI+KMGTS+DY
Sbjct: 157 ETTVSLFLFGDAYQMNMQEQAGTVFALFNSTVRKDNAGNGFSLSIYSTRQIMKMGTSVDY 216

Query: 220 GVCKGKRKDGMSCTVIINNLERH 242
           GVCKGKR DGM+CT++IN  +RH
Sbjct: 217 GVCKGKRTDGMACTLVIN--KRH 237