Jatropha Genome Database

JcCA0274731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0274731.10 - phase: 1 /partial
         (143 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g20930.1                                                       121   2e-28
Glyma10g26340.1                                                        68   3e-12
Glyma03g41010.1                                                        68   4e-12
Glyma19g43660.1                                                        49   2e-06
Glyma10g30810.1                                                        49   2e-06

>Glyma20g20930.1 
          Length = 417

 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 87/141 (61%), Gaps = 10/141 (7%)

Query: 3   NGGAPSILTESELGPSPSEVVAAMIKNKLRIEEMESEIIGSWSLESSMEGLHSKLERWQI 62
           N G    +T+SELGPS SEV A + +  L IEE E+  +G WSL+ S+EGL  K+ERWQ 
Sbjct: 287 NLGRRPFMTDSELGPSASEVAAVVAR--LPIEEGENSTVGGWSLDDSVEGLQPKVERWQT 344

Query: 63  EASSVYDHSDISSLIRSSVVSGGSGPYMHHRRHSEGDGGVFSCFGSVCGVQCSIVCGRSS 122
           E   VYD S+ S++  SS          H RR ++G  G+FSCF  +CGV+CSIVCG   
Sbjct: 345 ELPPVYDGSERSNMTTSSKKG------KHSRRQTDGGNGLFSCFSVICGVECSIVCGGGD 398

Query: 123 AKKRNRSGKRRNPSVDGLSFL 143
             K+NR  +RR  SVD  SFL
Sbjct: 399 NNKKNR--RRRVQSVDNESFL 417


>Glyma10g26340.1 
          Length = 553

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/63 (58%), Positives = 46/63 (73%), Gaps = 2/63 (3%)

Query: 9   ILTESELGPSPSEVVAAMIKNKLRIEEMESEIIGSWSLES-SMEGLHSKLERWQIEASSV 67
           ++TESELGPS SEV AA+I  K  I+E E+  +G WSL++ SMEGL SKLERWQ +   V
Sbjct: 491 VITESELGPSASEV-AAVIAQKPVIDEAENSTVGGWSLDAESMEGLESKLERWQTKLPPV 549

Query: 68  YDH 70
            DH
Sbjct: 550 IDH 552


>Glyma03g41010.1 
          Length = 354

 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 61/112 (54%), Gaps = 11/112 (9%)

Query: 13  SELGPSPSEVVAAMIKNKLRI-----EEMESEIIGSWSLESSMEGLHSKLERWQIEASSV 67
           S++GPSPS V AA+ K    +       +ES  +  WS  S  EG+ +K+ERW+ E +  
Sbjct: 237 SDVGPSPSVVAAAIAKGLYPMPPPAPRTVESSTMDGWSENSGTEGMKTKIERWRNELTPA 296

Query: 68  Y-DHSDISSLIRSSVVSGGSGPYMHHRRHSEGDGGVFSCFGSVCGVQCSIVC 118
           Y D+ D   ++R +    G  P    RR  +G GG  SCFGSV GV+ SI C
Sbjct: 297 YEDYVDERKVLRQTSKRVGRTP----RRRGQG-GGPCSCFGSVFGVEISITC 343


>Glyma19g43660.1 
          Length = 330

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 52/107 (48%), Gaps = 8/107 (7%)

Query: 18  SPSEVVAAMIKNKLRIEE---MESEIIG--SWSLESSMEGLHSKLERWQIEASSVYDHSD 72
           +PS V AA+ K  L +       SEI G   WS  S  EG+ +K+ERW+ E +  Y+  D
Sbjct: 198 TPSVVAAAIAKGLLPMPPPAPCTSEISGMDGWSENSGTEGMKTKIERWRNELTPAYEDYD 257

Query: 73  ISSLIRSSVVSGGSGPYMHHRRHSEGDGGVFSCFGSVCGVQCSIVCG 119
                R  V+   S       R     GG  SCFGSV G++ SI CG
Sbjct: 258 DE---RKKVMRKTSKRVGQTSRRRGRGGGPCSCFGSVFGIEISITCG 301


>Glyma10g30810.1 
          Length = 362

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 64/137 (46%), Gaps = 26/137 (18%)

Query: 13  SELGPSPSEVVAAMIKNKLRIEEMESE------IIGSWSLESSMEGLHSKLERWQIEASS 66
           S++GPSPS V AA+ K    +  M +       +   W  E    GL           ++
Sbjct: 231 SDVGPSPSVVAAAIAKGLYPLPMMTAPRKPGNLVFQDWPEERG--GL-----------TA 277

Query: 67  VYDH---SDISSLIRSSVVSGGSGPYMHHRRHSEGDGGVFSCFGSVCGVQCSIVC--GRS 121
           VYDH   ++ +  +R  V S   G    HR+ S  DGG+FSCFG+  G + SI C  G  
Sbjct: 278 VYDHLGKNNENKKVRH-VHSIPKGKGQKHRKGSS-DGGLFSCFGTAMGCEFSITCGGGHG 335

Query: 122 SAKKRNRSGKRRNPSVD 138
           + KKR   G +  P+ +
Sbjct: 336 NRKKRYEGGSKAPPTAE 352