Jatropha Genome Database

JcCA0273051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0273051.10 - phase: 1 /partial
         (55 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g08510.1                                                        64   4e-11

>Glyma10g08510.1 
          Length = 281

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 37/53 (69%)

Query: 3  AVKFGYYGAVGPEKWGSLSPTYSECSKGKSQSPINIIKNDTVLDSNLKPLIRD 55
          +  F Y G  GPE WGSLSP+Y+ CS GKSQSP+ ++K D V++  LK L R+
Sbjct: 25 SANFSYAGPNGPEYWGSLSPSYAACSHGKSQSPVELMKTDIVINKQLKNLNRN 77