Jatropha Genome Database

JcCA0271431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0271431.10 + phase: 0 
         (216 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g14810.1                                                       162   2e-40
Glyma04g40050.1                                                       160   1e-39

>Glyma06g14810.1 
          Length = 248

 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/243 (48%), Positives = 148/243 (60%), Gaps = 32/243 (13%)

Query: 2   ASVGIRCQGNCHFLNLRGPENSPV--GPCSVAISAGSDSSKLKR--------WRMKAAMT 51
           +S+GI C GN   L +       V   PCS+A+  G  ++++ R          +    T
Sbjct: 3   SSLGIACGGNNAKLGIPKQRCGSVLQPPCSLAM--GRSTARVGRITAAMATATAVMTTAT 60

Query: 52  IKKNEN---------MISTSDSAAANAAVV-YEKLDEWMKDSVVEIVKNLREAPLLVQVY 101
            K+ E          +    D  A N AV   E+LD WM++SVVEIVKNL+EAPLLVQV+
Sbjct: 61  AKEQETTTPMMMAMELFGKRDGGAKNDAVEGQERLDRWMRESVVEIVKNLKEAPLLVQVF 120

Query: 102 DKGETTALKTEKAVEEETWSTVKEKWGKRETPLPEGVIFVEQLDEEDPE----EITTRAW 157
            K  T  + TEK +  E W  VKE+W   ETP+PEGVIFVE+LD +  E    E TTRAW
Sbjct: 121 PKSAT--MTTEKRMVVEDWPAVKERWESGETPVPEGVIFVEELDGDTAEDGGGERTTRAW 178

Query: 158 GIVVQGKGVDCGPVCYLLKTSRV----GSGLGAFCTHFCLMKVKSFRESTRSQLKNFWLL 213
           G+VVQGKGV CGPVCYLLKT RV    GSG+G   THFCL+KVK FRE+ +SQLKN WLL
Sbjct: 179 GVVVQGKGVGCGPVCYLLKTVRVGSGPGSGMGICSTHFCLVKVKDFRETVQSQLKNCWLL 238

Query: 214 EGQ 216
           + Q
Sbjct: 239 QSQ 241


>Glyma04g40050.1 
          Length = 241

 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/211 (53%), Positives = 135/211 (63%), Gaps = 27/211 (12%)

Query: 27  PCSVAISAGSDSSKLKRWRMKAAM-TIKKNEN--MISTS----------DSAAANAAVVY 73
           PCSV++      S  +  R+ AAM T+K+ E   MI               A  +A    
Sbjct: 31  PCSVSMG----RSTARAGRITAAMPTVKEQETTPMIMMGAMELLGKRERGGAKNDALEGQ 86

Query: 74  EKLDEWMKDSVVEIVKNLREAPLLVQVYDKGETTALKTEKAVEEETWSTVKEKWGKRETP 133
           E+LD WM++SVVEIVKNL+EAPLLV V+ K  T A  TEK V  E W  VKE+W   ETP
Sbjct: 87  ERLDRWMRESVVEIVKNLKEAPLLVLVFPKSATMA--TEKRVVVEDWPAVKERWESGETP 144

Query: 134 LPEGVIFVEQLDEEDPE----EITTRAWGIVVQGKGVDCGPVCYLLKTSRVGS----GLG 185
           +PEG+IFVE+LD +  E    E TTRAWG+VVQGKGV CGPVCYLLKT RVGS    G+G
Sbjct: 145 VPEGLIFVEELDGDTAEDGGGERTTRAWGVVVQGKGVGCGPVCYLLKTCRVGSGPGNGMG 204

Query: 186 AFCTHFCLMKVKSFRESTRSQLKNFWLLEGQ 216
              THFCL+KV  FRE+ +SQLKN WLL+ Q
Sbjct: 205 ICSTHFCLVKVNDFRETVQSQLKNIWLLQNQ 235