Jatropha Genome Database

JcCA0270011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0270011.10 - phase: 1 /pseudo/partial
         (272 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g08840.1                                                        67   3e-11
Glyma02g13370.1                                                        66   4e-11
Glyma05g00200.1                                                        56   5e-08
Glyma04g32070.1                                                        54   2e-07

>Glyma17g08840.1 
          Length = 480

 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 116/269 (43%), Gaps = 64/269 (23%)

Query: 46  KMLAGGILSPDRHEASNCYRPVKLEE-------KSVYNSNGQ---------FVSKSFLRL 89
           +ML  G++  +++  S+ +RP+K E         S+  +NG          +  K F  L
Sbjct: 211 EMLPSGVMCSEKYGMSDFWRPIKAEHGTGFRNLSSMAATNGHPLPRSLFSSYNGKQFPFL 270

Query: 90  HGNGIQNTSG--IC------PSA-----------------TDEFTRLNTASTVHELAGVX 124
           H N   +T+G   C      PSA                  ++F+  +T+  V  L+G+ 
Sbjct: 271 HENSSTSTTGSIFCESNSHYPSALGAQNSGLRPLFQDTVGNEDFSVFDTSPNVQGLSGIS 330

Query: 125 XXX-XXXXXXXXXXQDLSHSAGIIMARPSISQANRSHH--------SVGISDKPFGVESL 175
                            S S+GI +A   +  ++ SHH         +GIS +       
Sbjct: 331 DSCCALSLLSSQSQNSSSQSSGIPLAHSLVIPSSHSHHYNMSQVSDKIGISSQTSSSRVS 390

Query: 176 EKYLPNGFHSSG--LNPF---KSNHMGSFTVSYAGELQVEPDGFLQESDLLNAKYCASDE 230
           + + P   H+ G  L+P     +N + +F ++         DG  Q SD LN K   SDE
Sbjct: 391 DSFPPELNHADGSHLSPVLISGNNDIINFDMA---------DGIFQGSDYLNVKDRLSDE 441

Query: 231 NGSTVDLLQLSSHLHRVEQQRNSAQVKHE 259
           +G+T+DLLQLSS L RVE +R S QVK E
Sbjct: 442 DGATIDLLQLSSQLQRVEHERQSLQVKQE 470


>Glyma02g13370.1 
          Length = 512

 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 67/127 (52%), Gaps = 6/127 (4%)

Query: 142 HSAGIIMARPSISQANR-SHHSVGISDKPFGVESLEKYLPN-GFHSSGLNP--FKSNHMG 197
           H+AG  +A P +    R       +S KP  +   +K  PN  F    ++    K+    
Sbjct: 382 HAAGNPLASPQVFSGIRIPDRDSRVSKKPLRISPADKLAPNESFPCDTISKEVIKNRSAA 441

Query: 198 SFT-VSYAGELQVEPDGFLQESDLLNAKYCASDENGSTVDLLQLSSHLHRVEQQRNSAQV 256
           +F+ V +A E+    D   Q S+L + K+  S E+ +TVDL QLSSHL RVEQQRNS  V
Sbjct: 442 TFSSVGHALEVH-NGDDICQPSELFSIKHSLSSEHAATVDLFQLSSHLQRVEQQRNSVLV 500

Query: 257 KHEVEDF 263
           K E ED+
Sbjct: 501 KWENEDY 507


>Glyma05g00200.1 
          Length = 483

 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 202 SYAGEL-QVEPDGFLQESDLLNAKYCASDENGSTVDLLQLSSHLHRVEQQRNSAQVKHE 259
           S+  EL   + +G  Q SD LN K   S E+G+T+DLLQLSS L RVE +R S QVK E
Sbjct: 415 SFPSELNHADGNGIFQASDYLNVKDHLSGEDGATIDLLQLSSQLQRVEHERQSLQVKQE 473


>Glyma04g32070.1 
          Length = 121

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 3/104 (2%)

Query: 159 SHHSVG-ISDKPFGVESLEKYLPNGFHSSGLNPFKSNHMGSFTVSYAGEL-QVE-PDGFL 215
           SH+++  +S+K  G+ S      +       NP   +H+    +S   E+   E  +G  
Sbjct: 8   SHYNMSRVSEKMIGISSQASSGVSDRFPPEFNPVDGSHLSPILISDNNEIINFEMANGIF 67

Query: 216 QESDLLNAKYCASDENGSTVDLLQLSSHLHRVEQQRNSAQVKHE 259
           Q SD +N K   S E+  T+DLLQLSS L RVE QR S QVK E
Sbjct: 68  QGSDFVNVKDRLSCEDSLTIDLLQLSSQLQRVENQRLSLQVKQE 111