Jatropha Genome Database

JcCA0269951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0269951.10 + phase: 0 /partial
         (50 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g28120.1                                                        60   4e-10
Glyma20g35490.1                                                        59   1e-09
Glyma13g21030.1                                                        58   2e-09
Glyma06g19320.1                                                        58   2e-09
Glyma17g09700.1                                                        57   5e-09
Glyma16g24040.1                                                        49   2e-06

>Glyma09g28120.1 
          Length = 367

 Score = 60.5 bits (145), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/29 (89%), Positives = 29/29 (100%)

Query: 2   VIFVDNSGADIILGILPFARELLRRGTQV 30
           +IFVDNSGADIILGI+PFARELLRRG+QV
Sbjct: 216 IIFVDNSGADIILGIMPFARELLRRGSQV 244


>Glyma20g35490.1 
          Length = 366

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/29 (89%), Positives = 28/29 (96%)

Query: 2   VIFVDNSGADIILGILPFARELLRRGTQV 30
           +IFVDNSGADIILGILPFARELLR G+QV
Sbjct: 217 IIFVDNSGADIILGILPFARELLRHGSQV 245


>Glyma13g21030.1 
          Length = 940

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/34 (70%), Positives = 31/34 (91%)

Query: 1   AVIFVDNSGADIILGILPFARELLRRGTQVCFIS 34
           A++FVDNSGADI+LG+LP ARELLRRGT+V  ++
Sbjct: 766 ALLFVDNSGADIVLGMLPLARELLRRGTEVVLVA 799


>Glyma06g19320.1 
          Length = 779

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/34 (70%), Positives = 31/34 (91%)

Query: 1   AVIFVDNSGADIILGILPFARELLRRGTQVCFIS 34
           A++FVDNSGADI+LG+LP ARELLRRGT+V  ++
Sbjct: 605 ALLFVDNSGADIVLGMLPLARELLRRGTEVVLVA 638


>Glyma17g09700.1 
          Length = 910

 Score = 57.0 bits (136), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/34 (67%), Positives = 31/34 (91%)

Query: 1   AVIFVDNSGADIILGILPFARELLRRGTQVCFIS 34
           A++FVDN+GADI+LG+LP ARELLRRGT+V  ++
Sbjct: 736 ALLFVDNAGADIVLGMLPLARELLRRGTEVVLVA 769


>Glyma16g24040.1 
          Length = 192

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/31 (70%), Positives = 26/31 (83%)

Query: 2   VIFVDNSGADIILGILPFARELLRRGTQVCF 32
           +IF DNSGADIILGI+PFARE+LR  +QV  
Sbjct: 114 IIFFDNSGADIILGIMPFAREVLRPRSQVVL 144