Jatropha Genome Database

JcCA0269931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0269931.10 - phase: 0 /pseudo
         (263 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g01270.1                                                       272   2e-73
Glyma18g47790.1                                                        90   2e-18
Glyma09g38520.1                                                        89   6e-18
Glyma07g07810.1                                                        77   2e-14

>Glyma03g01270.1 
          Length = 425

 Score =  272 bits (696), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 136/174 (78%), Positives = 155/174 (89%), Gaps = 3/174 (1%)

Query: 62  RIYCGSVMVKCQILAKDGSNEGKDDGFYIRRCVELARKAIGCTSPNPMVGCVIVKDGKIV 121
           R  C  + V+C   A +G N+  DDGFYIRRCVELARKA+G TSPNP+VGCVIVKDGK+V
Sbjct: 51  RSRCDGLRVQCA--ASNGEND-DDDGFYIRRCVELARKAVGFTSPNPLVGCVIVKDGKVV 107

Query: 122 GEGFHPKAGQPHAEVFALRDAGDLAENATAYVSLEPCNHYGRTPPCTEALIKAKIRKVVI 181
           GEGFHPKAGQPHAEVFALRDAGDLA++ATAYVSLEPCNH+GRTPPCTEALIKAK++KVV+
Sbjct: 108 GEGFHPKAGQPHAEVFALRDAGDLAQSATAYVSLEPCNHFGRTPPCTEALIKAKVKKVVV 167

Query: 182 GMVDPNPIVASSGLDRLRDAGIDVTFGIEEELCKRLNEAYIHQMLTGKPFVTLR 235
           GMVDPNPIVA  G++RLRDAGI+V  G+EEELCK LNE YIH+MLTGKPF+TLR
Sbjct: 168 GMVDPNPIVAFKGVERLRDAGIEVIVGVEEELCKSLNEPYIHRMLTGKPFLTLR 221


>Glyma18g47790.1 
          Length = 594

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 2/160 (1%)

Query: 86  DGFYIRRCVELARKAIGCTSPNPMVGCVIVK-DGKIVGEGFHPKAGQPHAEVFALRDAGD 144
           D  YIRR   LA K+ G TSP+P  GCVIV   GK+ GEG+    G   AEV A++ AG+
Sbjct: 31  DATYIRRAAHLADKSAGFTSPHPNFGCVIVSPSGKVAGEGYLYAQGTAAAEVQAVKAAGE 90

Query: 145 LAENATAYVSLEPCNHYGRTPPCTEALIKAKIRKVVIGMVDPNPIVASSGLDRLRDAGID 204
           L   ATAY+++EP + +G       AL++  +++VV+GM  P   +  + +  LR+ G+ 
Sbjct: 91  LCRGATAYLNMEPGDCHGDH-SAVSALLQGGVKRVVVGMRHPLQHLRGNAVRALRNQGLH 149

Query: 205 VTFGIEEELCKRLNEAYIHQMLTGKPFVTLR*QQYPYLII 244
           V    E+     + +A    +L   P +     + P+ ++
Sbjct: 150 VDLLGEDLTSNLIEDAQKECLLVNAPLICRAALRVPFSVL 189


>Glyma09g38520.1 
          Length = 564

 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 92/179 (51%), Gaps = 4/179 (2%)

Query: 67  SVMVKCQILAKDGSNEGKDDGFYIRRCVELARKAIGCTSPNPMVGCVIVK-DGKIVGEGF 125
           SV+ KC++      +    D  YIRR   LA K+ G TSP+P  GCVIV   GK+ GEG+
Sbjct: 14  SVICKCKVSLPTAPH--ALDATYIRRAAHLADKSAGFTSPHPNFGCVIVSPSGKVSGEGY 71

Query: 126 HPKAGQPHAEVFALRDAGDLAENATAYVSLEPCNHYGRTPPCTEALIKAKIRKVVIGMVD 185
               G   AEV A+  A +L   ATAY++LEP + +G       AL++  +++VVIGM  
Sbjct: 72  LYAQGTTAAEVQAVASAAELCRGATAYLNLEPSDCHGDH-SAVSALLQGGVKRVVIGMRH 130

Query: 186 PNPIVASSGLDRLRDAGIDVTFGIEEELCKRLNEAYIHQMLTGKPFVTLR*QQYPYLII 244
           P   +  + +  LR+ G+ V    E+     + +A    +L   P +     + P+ ++
Sbjct: 131 PLQHLRGNAVRALRNQGLHVDLLGEDLTSNLIEDAQKECLLVNAPLICRASLRVPFSVL 189


>Glyma07g07810.1 
          Length = 257

 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/53 (77%), Positives = 47/53 (88%)

Query: 183 MVDPNPIVASSGLDRLRDAGIDVTFGIEEELCKRLNEAYIHQMLTGKPFVTLR 235
           MVDPNPIVA  G++RLRDAGI+V  G+EEELCK LNE YIH+MLTGKPF+TLR
Sbjct: 1   MVDPNPIVAFKGVERLRDAGIEVVVGVEEELCKSLNEPYIHRMLTGKPFLTLR 53