Jatropha Genome Database

JcCA0269921.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0269921.20 + phase: 0 /pseudo
         (140 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g07550.1                                                        89   2e-18
Glyma14g37390.1                                                        84   6e-17
Glyma02g39270.1                                                        78   3e-15

>Glyma03g07550.1 
          Length = 285

 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 53/65 (81%), Gaps = 1/65 (1%)

Query: 62  ETLDVAPQEQV-TGDIGVGNTVKIDFCSSCSYRGTAVTMKKMLETQFPGIHVMLANYPPP 120
           + L+   Q+Q   G IG+GNTV IDFC+SCSY+G AVT+K MLE++FPGI+V+LANYPPP
Sbjct: 109 QPLEFPTQKQSGIGLIGIGNTVSIDFCTSCSYKGNAVTVKNMLESEFPGINVVLANYPPP 168

Query: 121 LPXRV 125
           LP R+
Sbjct: 169 LPKRI 173


>Glyma14g37390.1 
          Length = 287

 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 51/68 (75%), Gaps = 4/68 (5%)

Query: 61  PETLDVAPQEQVTGDI---GVGNTVKIDFCSSCSYRGTAVTMKKMLETQFPGIHVMLANY 117
           P T+D  P E+ T +I   G+GNTV I+FCSSCSY+GTAVTMK MLE  FPG  V+LANY
Sbjct: 109 PVTIDFPP-EKPTNNIATPGLGNTVHINFCSSCSYKGTAVTMKNMLEIAFPGTEVILANY 167

Query: 118 PPPLPXRV 125
           PP LP R+
Sbjct: 168 PPTLPKRL 175


>Glyma02g39270.1 
          Length = 267

 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 48/67 (71%), Gaps = 2/67 (2%)

Query: 61  PETLDVAPQEQVTGDI--GVGNTVKIDFCSSCSYRGTAVTMKKMLETQFPGIHVMLANYP 118
           P  ++  P++ ++     G+GNTV I+FCSSCSY+GTAVTMK MLE   PG  V+LANYP
Sbjct: 89  PVIIEFPPEKPISNIATPGLGNTVYINFCSSCSYKGTAVTMKNMLEIALPGTEVILANYP 148

Query: 119 PPLPXRV 125
           P LP R+
Sbjct: 149 PSLPKRL 155