Jatropha Genome Database

JcCA0265561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0265561.10 + phase: 2 /partial
         (128 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g30960.1                                                       173   4e-44

>Glyma07g30960.1 
          Length = 447

 Score =  173 bits (438), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 86/122 (70%), Positives = 99/122 (81%), Gaps = 3/122 (2%)

Query: 1   LYRSSEQTNQRILFDIEPFGRHLGTGGQDGLVHIYDLQTGQWTSSFQAAADTVSGFSFHP 60
           LYRSSE TNQRILFDI+P G++LGTGGQDGLVHIY+LQTGQW SSF+AA DTV+GFSFHP
Sbjct: 324 LYRSSENTNQRILFDIDPSGKYLGTGGQDGLVHIYNLQTGQWVSSFEAALDTVNGFSFHP 383

Query: 61  FLPMAASSSGHRRFQVPDDGHENLLLNDDENCASVWSFFYASAMENGTDVQV-GDFNSQS 119
           FLP A SSSGHRRF +PDDG+E   L   ENC S+W+F   S ME  TD++  G FN+QS
Sbjct: 384 FLPHAVSSSGHRRFVIPDDGNEEFCLTGRENCLSMWTFCCDSMME--TDLKNDGSFNNQS 441

Query: 120 ES 121
           ES
Sbjct: 442 ES 443