Jatropha Genome Database

JcCA0262351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0262351.10 - phase: 0 
         (165 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g18770.1                                                       170   5e-43
Glyma12g20560.1                                                        97   1e-20
Glyma07g27560.1                                                        86   2e-17

>Glyma08g18770.1 
          Length = 183

 Score =  170 bits (431), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 84/157 (53%), Positives = 106/157 (67%), Gaps = 6/157 (3%)

Query: 6   QNTHVKLLAFDLLSLTQLPXXXXXXXXXXXRLGKSFSRAEILGIVTSREHKPNKFLKFTI 65
            NTHVKLLAFDLLSLTQ P           R G   SR E +G +T R+ K ++FL+F +
Sbjct: 15  HNTHVKLLAFDLLSLTQSPFPSSDATTSFFRRGIPISRVETVGTITLRDLKHDRFLRFAV 74

Query: 66  DDGTGCVSCVLWLNQLTSPYFSRRSPPDVRLIADMASHFASEIKIGVVACVRGRITSYRG 125
           DDGT CV CVLWLN   SP  +RR         ++A+ FA+ +K+G VA VRGR++ +RG
Sbjct: 75  DDGTACVPCVLWLNDANSPSVARRRR------HELAARFAALVKLGAVARVRGRLSRFRG 128

Query: 126 AVQITVSDVVIERDPNAEILHWLNCIRLARNCYDVSP 162
            +Q+TVSDV IERDPNAEI H L+CI LARNCY++ P
Sbjct: 129 TLQVTVSDVAIERDPNAEIFHRLDCILLARNCYNILP 165


>Glyma12g20560.1 
          Length = 109

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 73/115 (63%), Gaps = 7/115 (6%)

Query: 45  EILGIVTSREHKPNKFLKFTIDDGTGCVSCVLWLNQLTSPYFSRRSPPDVRLIADMASHF 104
           EI+G +     K ++FL F +DDGT C+  +L LN   S   + R   D       A  F
Sbjct: 2   EIVGSIMLWNLKHDQFLCFAVDDGTNCI-LLLSLNDANSSSVACRHHHD------HAMRF 54

Query: 105 ASEIKIGVVACVRGRITSYRGAVQITVSDVVIERDPNAEILHWLNCIRLARNCYD 159
           AS +K+ +VA V+GR++ +RGAVQ+T+S+VV+ER+PNAEI H LNCI L  N Y+
Sbjct: 55  ASLVKLDIVAIVKGRLSRFRGAVQVTMSNVVVERNPNAEIFHCLNCILLTHNYYN 109


>Glyma07g27560.1 
          Length = 91

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/115 (41%), Positives = 66/115 (57%), Gaps = 25/115 (21%)

Query: 45  EILGIVTSREHKPNKFLKFTIDDGTGCVSCVLWLNQLTSPYFSRRSPPDVRLIADMASHF 104
           EI+G +T +E K + FL+F ++D  GCV C+LWLN   S            L   + + F
Sbjct: 2   EIMGTITLQELKHDWFLRFVMNDDIGCVPCLLWLNDANS------------LSVGLTTRF 49

Query: 105 ASEIKIGVVACVRGRITSYRGAVQITVSDVVIERDPNAEILHWLNCIRLARNCYD 159
           AS IK+G VA             ++TVSD+V+ERD NA+I H L+CI LA NCY+
Sbjct: 50  ASLIKLGTVA-------------RVTVSDIVVERDLNAKIFHRLDCILLAHNCYN 91