Jatropha Genome Database

JcCA0262331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0262331.10 - phase: 0 
         (78 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g12660.1                                                        50   6e-07
Glyma06g45830.1                                                        47   5e-06
Glyma13g37320.1                                                        47   6e-06

>Glyma12g12660.1 
          Length = 71

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 27/39 (69%), Gaps = 4/39 (10%)

Query: 44 GRHRVPGGCA----SLDKEKFAPRFDGLRFIETLITAHR 78
          G  R  GG +    S   EKFAPRFDGLRFIETLITAHR
Sbjct: 33 GAQRSHGGSSPVANSASTEKFAPRFDGLRFIETLITAHR 71


>Glyma06g45830.1 
          Length = 71

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/21 (100%), Positives = 21/21 (100%)

Query: 58 EKFAPRFDGLRFIETLITAHR 78
          EKFAPRFDGLRFIETLITAHR
Sbjct: 51 EKFAPRFDGLRFIETLITAHR 71


>Glyma13g37320.1 
          Length = 64

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/21 (95%), Positives = 21/21 (100%)

Query: 58 EKFAPRFDGLRFIETLITAHR 78
          EKFAPRFDGLRFIETL+TAHR
Sbjct: 44 EKFAPRFDGLRFIETLVTAHR 64