Jatropha Genome Database

JcCA0261291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0261291.10 - phase: 1 /pseudo/partial
         (68 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g43390.1                                                        52   1e-07
Glyma06g17970.1                                                        49   9e-07
Glyma17g29280.1                                                        49   2e-06

>Glyma13g43390.1 
          Length = 257

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/56 (46%), Positives = 33/56 (58%)

Query: 2   WSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINACQSLSRGVTDVKLAEA 57
           W KPP G+ KCN DA + S+ +R GVG  LRDE G +I A  S    + +   AEA
Sbjct: 202 WHKPPTGQIKCNMDATIFSHDTRFGVGLCLRDETGRIIRAKTSWHPVLPETAEAEA 257


>Glyma06g17970.1 
          Length = 270

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query: 2   WSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINACQSLSRGVTDVKLAEALSFR 61
           WS P   + +CN DAA+  +  + G G  LRDE G+ + A  + + GV   + AEA +  
Sbjct: 134 WSPPSRNQVECNVDAAIFEDVKQFGAGLCLRDEKGNFLKAFTATTTGVPTPREAEAWALH 193

Query: 62  QALT*T 67
           QA+  T
Sbjct: 194 QAINWT 199


>Glyma17g29280.1 
          Length = 865

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 2   WSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINACQSLSRGVTDVKLAEALSFR 61
           WS PP G  KCN DA++       G+G  L D++G+ + A  + S  +     AEA + +
Sbjct: 266 WSPPPLGSLKCNVDASIFKEEPSFGIGMCLHDDNGTFVKARTASSMSIPKPDEAEAFALK 325

Query: 62  QAL 64
           ++L
Sbjct: 326 KSL 328