Jatropha Genome Database

JcCA0257621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0257621.10 - phase: 0 
         (93 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g15800.1                                                        84   3e-17

>Glyma17g15800.1 
          Length = 674

 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/82 (59%), Positives = 57/82 (69%), Gaps = 2/82 (2%)

Query: 12 IVSSLSSSFKQVPLPAIPPMLDCILASTGLSSASLFYSLLDSFPN-LSKDFIKE-DQKLD 69
          +V+SLS+SF QVP  A+P MLDCIL STGLS  SLF SLL  FP  L KD   E D  LD
Sbjct: 3  VVASLSASFYQVPPSAVPAMLDCILVSTGLSPPSLFASLLHDFPRILLKDITNEGDDDLD 62

Query: 70 SGCCDFLMSIVGALCHLLKKLG 91
          +     L+S+VGA CHLLKK+G
Sbjct: 63 ADKRLHLVSMVGAFCHLLKKMG 84