Jatropha Genome Database

JcCA0255951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0255951.10 - phase: 0 /pseudo
         (162 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g00790.1                                                       187   4e-48

>Glyma10g00790.1 
          Length = 165

 Score =  187 bits (475), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 88/114 (77%), Positives = 101/114 (88%)

Query: 1   MGETKATMANHLLAVKRNSGKNYSQIAEETGLTNVYVAQLLKRQAQLKPETAPKLRAALP 60
           M + KA +   L AVK NSGK+Y+Q+AEETGLTNVYVAQLL+RQAQL P+TAP LRAALP
Sbjct: 1   MEQKKAKIVAELQAVKHNSGKSYNQLAEETGLTNVYVAQLLRRQAQLNPQTAPLLRAALP 60

Query: 61  ELSDEMLQEMMRPPMRSYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGI 114
           +L  +++ EMMRPP+RSYDPNLIQ+PTVYRLNEAVMHFGESIKEIINEEFGDGI
Sbjct: 61  DLPQDLVSEMMRPPLRSYDPNLIQDPTVYRLNEAVMHFGESIKEIINEEFGDGI 114