Jatropha Genome Database

JcCA0254841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0254841.10 - phase: 2 /partial/short
         (45 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g10540.1                                                        65   2e-11

>Glyma06g10540.1 
          Length = 685

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/44 (70%), Positives = 36/44 (81%), Gaps = 1/44 (2%)

Query: 2   KLNMF-MADTNLKSPDDFVPEGVPGIGSVYNVAPYSSILLEAKL 44
           K N F + DTNLKSPDDFV +GVP +G+ YN+APYSSILLEAK 
Sbjct: 642 KRNWFRVVDTNLKSPDDFVLDGVPNVGNTYNIAPYSSILLEAKF 685