Jatropha Genome Database

JcCA0251661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0251661.10 - phase: 1 /partial
         (179 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g01270.1                                                       191   5e-49
Glyma07g04690.1                                                       187   6e-48

>Glyma16g01270.1 
          Length = 1162

 Score =  191 bits (484), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 103/182 (56%), Positives = 133/182 (73%), Gaps = 8/182 (4%)

Query: 3   PQTPVMSGVGSPASVSNISVPLNANSPSVGTPPMADQT---MLERLSKIEMVTIRHQLNS 59
           P+TP M+GVGSP SV   SVPLNANSPSV T    DQ    MLER SKIEMVT+RHQLN 
Sbjct: 454 PKTPAMNGVGSPVSVGTTSVPLNANSPSVVTSGFVDQNLQNMLERFSKIEMVTMRHQLNF 513

Query: 60  KKNKVDDFPVRKPNTYSHQNVMACL--SNLPNNEDLKDDASARQLFKSVVGGSMNVLKIR 117
           KKNKVDD+P++K N Y   N+ A L  +N  NNE L +++ +  + KS++GGSMN  K+R
Sbjct: 514 KKNKVDDYPIKKQNPYVPNNLSALLANANATNNEGLPEESIS--ISKSLIGGSMNACKMR 571

Query: 118 IINFLLADRVIQGNAVSFVPRSRTRMILSEKPNDGTVAMHYGEPEDGDPLSVEDYLPSLP 177
           I+NF + +RV+QG+ V+ +PR RTRMI+ EK +DGTVAMH G  E+ D ++ ED+L +LP
Sbjct: 572 ILNFCVPERVVQGSIVTIIPRMRTRMIMFEK-SDGTVAMHCGVIEEVDYVAAEDHLLTLP 630

Query: 178 NT 179
           NT
Sbjct: 631 NT 632


>Glyma07g04690.1 
          Length = 1132

 Score =  187 bits (474), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 105/180 (58%), Positives = 136/180 (75%), Gaps = 6/180 (3%)

Query: 3   PQTPVMSGVGSPASVSNISVPLNANSPSVGTPPMADQT---MLERLSKIEMVTIRHQLNS 59
           P+TP M+GVGSPASV   SVPLNANSPSV T  + DQ    MLER SKIEMVT+RHQLN 
Sbjct: 459 PKTPAMNGVGSPASVGTTSVPLNANSPSVVTSGLVDQNLQNMLERFSKIEMVTMRHQLNF 518

Query: 60  KKNKVDDFPVRKPNTYSHQNVMACLSNLPNNEDLKDDASARQLFKSVVGGSMNVLKIRII 119
           KKNKVDD+P++K N Y+  N+ A L+N  NNE L +++ +  L KS++GGSMN  K+RI+
Sbjct: 519 KKNKVDDYPIKKQNPYAQNNLAALLANATNNEGLPEESIS--LSKSLIGGSMNACKMRIL 576

Query: 120 NFLLADRVIQGNAVSFVPRSRTRMILSEKPNDGTVAMHYGEPEDGDPLSVEDYLPSLPNT 179
            F + +RV+QG+ V+ +PR RTRMI+ EK +DGTVAMH GE E+ D ++ ED+L +LPNT
Sbjct: 577 TFCVPERVVQGSVVTIIPRMRTRMIIFEK-SDGTVAMHCGEIEEVDYVAAEDHLLTLPNT 635