Jatropha Genome Database

JcCA0246001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0246001.10 + phase: 1 /pseudo/partial
         (101 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g06780.1                                                        79   1e-15
Glyma02g42130.1                                                        79   1e-15
Glyma20g28590.1                                                        74   3e-14
Glyma10g39300.1                                                        51   3e-07

>Glyma14g06780.1 
          Length = 532

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/42 (78%), Positives = 40/42 (95%)

Query: 53  DFELSSLTALSPLDGRYWGKVKDLSPHMSEYGLIFYRVLVEV 94
           DFELS+LTALSPLDGRYW KVK+L+P +SEYGLI++RVLVE+
Sbjct: 65  DFELSALTALSPLDGRYWSKVKELAPFLSEYGLIYFRVLVEI 106


>Glyma02g42130.1 
          Length = 537

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/42 (78%), Positives = 40/42 (95%)

Query: 53  DFELSSLTALSPLDGRYWGKVKDLSPHMSEYGLIFYRVLVEV 94
           DFELS+LTALSPLDGRYW KVK+L+P +SEYGLI++RVLVE+
Sbjct: 70  DFELSALTALSPLDGRYWSKVKELAPFLSEYGLIYFRVLVEI 111


>Glyma20g28590.1 
          Length = 413

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 39/43 (90%)

Query: 51 ARDFELSSLTALSPLDGRYWGKVKDLSPHMSEYGLIFYRVLVE 93
          + DFELS LTALSPLDGRYW KVK+L+P +SEYGLI++RVLVE
Sbjct: 31 SADFELSVLTALSPLDGRYWSKVKELTPFLSEYGLIYFRVLVE 73


>Glyma10g39300.1 
          Length = 302

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 32/47 (68%), Gaps = 6/47 (12%)

Query: 51 ARDFELSSLTALSPLDGRYWGKVKDLSPHMSEYGLIFYRVLVEVPSF 97
          + DFELS+LTALSPLDGRYWGK+K L        L     +VEVPSF
Sbjct: 34 SADFELSALTALSPLDGRYWGKIKWL------LQLSQIPEIVEVPSF 74