Jatropha Genome Database

JcCA0238091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0238091.10 + phase: 2 /partial
         (183 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g04680.1                                                       230   7e-61
Glyma05g35040.1                                                       228   3e-60
Glyma08g04680.3                                                       196   1e-50
Glyma08g04680.2                                                       123   1e-28

>Glyma08g04680.1 
          Length = 338

 Score =  230 bits (586), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 118/161 (73%), Positives = 121/161 (75%), Gaps = 2/161 (1%)

Query: 25  IKGNSRLSFADDMXXXXXXXXXXXXXXXXXG--LVRGKFGKDPTVETSFLPDSXXXXXXX 82
           I+GNSRLSFA+D+                    L  GK GKDPTVETSFLPDS       
Sbjct: 115 IRGNSRLSFAEDIDNEPQEDEPHHSKDNLEANRLRCGKLGKDPTVETSFLPDSEREAEEQ 174

Query: 83  XXXXXXXKQWLHEQEQIRNEPLEITYSYWDGAGHRRVIQARKGDSIGEFLRAVQQQLAPE 142
                  KQWL EQEQIRNEPLEITYSYWDG GHRRVIQ RKGDSIGEFLRAVQQQLAPE
Sbjct: 175 AERERLRKQWLREQEQIRNEPLEITYSYWDGTGHRRVIQVRKGDSIGEFLRAVQQQLAPE 234

Query: 143 FREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGP 183
           FREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGP
Sbjct: 235 FREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGP 275


>Glyma05g35040.1 
          Length = 338

 Score =  228 bits (581), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 117/161 (72%), Positives = 121/161 (75%), Gaps = 2/161 (1%)

Query: 25  IKGNSRLSFADDMXXXXXXXXXXXXXXXXXG--LVRGKFGKDPTVETSFLPDSXXXXXXX 82
           I+GNSRLSFA+D+                    L  GK GKDPTVETSFLPDS       
Sbjct: 115 IRGNSRLSFAEDVDNDPQDDEPHHSKDNLEANRLRCGKLGKDPTVETSFLPDSEREAEEQ 174

Query: 83  XXXXXXXKQWLHEQEQIRNEPLEITYSYWDGAGHRRVIQARKGDSIGEFLRAVQQQLAPE 142
                  KQWL EQEQIRNEPLEITYSYWDG GHRRVIQ RKGDSIGEFLRAVQQQLAPE
Sbjct: 175 AERERLRKQWLREQEQIRNEPLEITYSYWDGTGHRRVIQVRKGDSIGEFLRAVQQQLAPE 234

Query: 143 FREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGP 183
           FREIRTT+VENLLYVKEDLIIPHQHSFYELIVNKARGKSGP
Sbjct: 235 FREIRTTTVENLLYVKEDLIIPHQHSFYELIVNKARGKSGP 275


>Glyma08g04680.3 
          Length = 280

 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 101/147 (68%), Positives = 105/147 (71%), Gaps = 2/147 (1%)

Query: 25  IKGNSRLSFADDMXXXXXXXXXXXXXXXXXG--LVRGKFGKDPTVETSFLPDSXXXXXXX 82
           I+GNSRLSFA+D+                    L  GK GKDPTVETSFLPDS       
Sbjct: 115 IRGNSRLSFAEDIDNEPQEDEPHHSKDNLEANRLRCGKLGKDPTVETSFLPDSEREAEEQ 174

Query: 83  XXXXXXXKQWLHEQEQIRNEPLEITYSYWDGAGHRRVIQARKGDSIGEFLRAVQQQLAPE 142
                  KQWL EQEQIRNEPLEITYSYWDG GHRRVIQ RKGDSIGEFLRAVQQQLAPE
Sbjct: 175 AERERLRKQWLREQEQIRNEPLEITYSYWDGTGHRRVIQVRKGDSIGEFLRAVQQQLAPE 234

Query: 143 FREIRTTSVENLLYVKEDLIIPHQHSF 169
           FREIRTTSVENLLYVKEDLIIPH  +F
Sbjct: 235 FREIRTTSVENLLYVKEDLIIPHVLAF 261


>Glyma08g04680.2 
          Length = 294

 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 78/161 (48%), Gaps = 46/161 (28%)

Query: 25  IKGNSRLSFADDMXXXXXXXXXXXXXXXXXG--LVRGKFGKDPTVETSFLPDSXXXXXXX 82
           I+GNSRLSFA+D+                    L  GK GKDPTVETSFLPDS       
Sbjct: 115 IRGNSRLSFAEDIDNEPQEDEPHHSKDNLEANRLRCGKLGKDPTVETSFLPDSEREAEEQ 174

Query: 83  XXXXXXXKQWLHEQEQIRNEPLEITYSYWDGAGHRRVIQARKGDSIGEFLRAVQQQLAPE 142
                  KQWL EQEQIRNEPLEITYSYWDG GHRRVIQ                     
Sbjct: 175 AERERLRKQWLREQEQIRNEPLEITYSYWDGTGHRRVIQ--------------------- 213

Query: 143 FREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGP 183
                                  QHSFYELIVNKARGKSGP
Sbjct: 214 -----------------------QHSFYELIVNKARGKSGP 231