Jatropha Genome Database

JcCA0237241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0237241.10 - phase: 1 /partial
         (222 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g50140.1                                                       134   7e-32
Glyma08g26890.1                                                       123   2e-28
Glyma08g26890.2                                                        60   2e-09

>Glyma18g50140.1 
          Length = 613

 Score =  134 bits (337), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 103/242 (42%), Positives = 118/242 (48%), Gaps = 44/242 (18%)

Query: 3   EAQQPPHLFLSASNPKSLEDAKRLAENLLDTISLECGASRVSSSKVYNAVPPP------- 55
           + QQP HLFLS++N KSLEDAK LAENLLDTI  ECGASRVSS KVY+AVPPP       
Sbjct: 274 DGQQPLHLFLSSNNAKSLEDAKLLAENLLDTICTECGASRVSSCKVYSAVPPPQQAYTAV 333

Query: 56  --------------QQLLAGVQNSGNE----NKLNAIPPAGLALSAMSSTPPIPATSVKL 97
                         QQLL GVQ+SG +      L  +PPA L          +  T V  
Sbjct: 334 PPPQQVYSAVPPPQQQLLTGVQSSGIDLEAAGVLTPVPPASL----------VGVTGVTG 383

Query: 98  HVTNSQGTVYQPGGLINSXXXXXXXXXXXXXSVXXXXXXXXXXXXXPQATPLQQVALALR 157
            +T   GT  Q    ++S              V             PQATPLQQVALALR
Sbjct: 384 ALT--LGTTPQSIRHLSSGPQANMTGYTPPPLVSGGTSYIGYGGLYPQATPLQQVALALR 441

Query: 158 QSTSPITSTVAPXXXXXXXXXXXXXXXXXXXXXXXGKEKRPTQKRKFQELPIGLKDPAKC 217
            S  P+ STVAP                        KEKRP Q+RKFQELP+G KD  K 
Sbjct: 442 HS-PPVASTVAPTTSASNRGSKSTLSSDLE------KEKRPPQRRKFQELPVGSKDTTKL 494

Query: 218 HQ 219
           +Q
Sbjct: 495 NQ 496


>Glyma08g26890.1 
          Length = 636

 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/241 (41%), Positives = 116/241 (48%), Gaps = 32/241 (13%)

Query: 3   EAQQPPHLFLSASNPKSLEDAKRLAENLLDTISLECGASRVSSSKVYNAVPPPQQLLAGV 62
           + QQP HLFLS++N KSLEDAK LAENLLDTI  ECGA RVSS KVY+AVPPPQQ+   V
Sbjct: 250 DGQQPLHLFLSSNNAKSLEDAKLLAENLLDTICTECGALRVSSCKVYSAVPPPQQVYTAV 309

Query: 63  ----QNSGNENKLNAI---------------PPAGLALSAMSSTPPIPATSVKLHVTNSQ 103
               Q     + L  I               PP  L     SS   + A S+ + VT   
Sbjct: 310 PPPQQVYSGPSLLKQIPTAISPPQQVYSAVPPPQQLLTGVQSSGIDLEAASL-VGVTGVT 368

Query: 104 GTVY-----QPGGLINSXXXXXXXXXXXXXSVXXXXXXXXXXXXXPQATPLQQVALALRQ 158
           G++      Q  G ++S              V             PQATPLQQVALALR 
Sbjct: 369 GSLTLGTPSQSIGHLSSGPQANMIGYTPPPLVSGGTSYIGYGGLYPQATPLQQVALALRH 428

Query: 159 STSPITSTVAPXXXXXXXXXXXXXXXXXXXXXXXGKEKRPTQKRKFQELPIGLKDPAKCH 218
           S  P+TST AP                        KEKRP Q+RKFQELP+G K   K +
Sbjct: 429 S-PPVTSTDAPTTSASNGESRPTSSSDLE------KEKRPPQRRKFQELPVGSKGTTKLN 481

Query: 219 Q 219
           Q
Sbjct: 482 Q 482


>Glyma08g26890.2 
          Length = 253

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 42/76 (55%), Gaps = 7/76 (9%)

Query: 144 PQATPLQQVALALRQSTSPITSTVAPXXXXXXXXXXXXXXXXXXXXXXXGKEKRPTQKRK 203
           PQATPLQQVALALR S  P+TST AP                        KEKRP Q+RK
Sbjct: 68  PQATPLQQVALALRHS-PPVTSTDAPTTSASNGESRPTSSSDLE------KEKRPPQRRK 120

Query: 204 FQELPIGLKDPAKCHQ 219
           FQELP+G K   K +Q
Sbjct: 121 FQELPVGSKGTTKLNQ 136