Jatropha Genome Database

JcCA0233921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0233921.10 - phase: 0 /pseudo/partial
         (412 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g40510.1                                                       184   2e-46
Glyma15g15750.1                                                       123   4e-28
Glyma20g37260.1                                                       107   3e-23
Glyma20g37260.2                                                       107   3e-23
Glyma03g40500.1                                                        99   8e-21
Glyma19g43160.1                                                        96   9e-20

>Glyma14g40510.1 
          Length = 1075

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/119 (72%), Positives = 99/119 (83%), Gaps = 1/119 (0%)

Query: 45  MNGYISPCSGDTQPPIFRSPVVGMEDILDNEVICAVYRLPDPHKHITRPPAGVIFPKKMV 104
           MNGYIS C G+  PPIFRSP+  MEDI+DN VICA+YRLPD HKHITRPP GV FPKK+V
Sbjct: 761 MNGYISLCGGEPCPPIFRSPIASMEDIMDNHVICAIYRLPDAHKHITRPPQGVKFPKKIV 820

Query: 105 NSGDLKPDPVLWHEDSGRR-PWESQRHNPPGTISGRQLGEVSHRLVMNSLQLKVDHNGY 162
             GDLKP+PVLWHEDSGRR   E+ R NPPG+ISGR+LG+ +HRL++NSLQ KVD NGY
Sbjct: 821 EIGDLKPEPVLWHEDSGRRHHSENGRKNPPGSISGRELGDAAHRLIVNSLQAKVDTNGY 879


>Glyma15g15750.1 
          Length = 86

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 64/79 (81%)

Query: 45  MNGYISPCSGDTQPPIFRSPVVGMEDILDNEVICAVYRLPDPHKHITRPPAGVIFPKKMV 104
           MNGYIS   G+  PPIFRS +  MEDI+DN VICA+YRLPD HKHI+RPP GV F KK+V
Sbjct: 1   MNGYISLYGGEPCPPIFRSLIASMEDIMDNHVICAIYRLPDAHKHISRPPQGVKFLKKIV 60

Query: 105 NSGDLKPDPVLWHEDSGRR 123
             GDLKP+PVLWHEDSGRR
Sbjct: 61  EIGDLKPEPVLWHEDSGRR 79


>Glyma20g37260.1 
          Length = 932

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 73/113 (64%), Gaps = 1/113 (0%)

Query: 45  MNGYISPCSGDTQPPIFRSPVVGMEDILDNEVICAVYRLPDPHKHITRPPAGVIFPKKMV 104
           MNGY+  C  +    +  SP+ G++DI  N+V+   +  P  H HI +PP GV+ PKK++
Sbjct: 652 MNGYLWLCERNVFSSVISSPISGLQDIEYNQVLNITFLNPRRHDHIPKPPDGVVIPKKVL 711

Query: 105 NSGDLKPDPVLWHEDS-GRRPWESQRHNPPGTISGRQLGEVSHRLVMNSLQLK 156
            + D+KP PVLWHED+ G+R    +R   PG I+G QLGE +HRLV N+L +K
Sbjct: 712 KAIDIKPFPVLWHEDNIGQRQQARERLQVPGAIAGSQLGEAAHRLVKNTLNIK 764


>Glyma20g37260.2 
          Length = 931

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 73/113 (64%), Gaps = 1/113 (0%)

Query: 45  MNGYISPCSGDTQPPIFRSPVVGMEDILDNEVICAVYRLPDPHKHITRPPAGVIFPKKMV 104
           MNGY+  C  +    +  SP+ G++DI  N+V+   +  P  H HI +PP GV+ PKK++
Sbjct: 651 MNGYLWLCERNVFSSVISSPISGLQDIEYNQVLNITFLNPRRHDHIPKPPDGVVIPKKVL 710

Query: 105 NSGDLKPDPVLWHEDS-GRRPWESQRHNPPGTISGRQLGEVSHRLVMNSLQLK 156
            + D+KP PVLWHED+ G+R    +R   PG I+G QLGE +HRLV N+L +K
Sbjct: 711 KAIDIKPFPVLWHEDNIGQRQQARERLQVPGAIAGSQLGEAAHRLVKNTLNIK 763


>Glyma03g40500.1 
          Length = 966

 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 73/120 (60%)

Query: 45  MNGYISPCSGDTQPPIFRSPVVGMEDILDNEVICAVYRLPDPHKHITRPPAGVIFPKKMV 104
           MNGY+     +       SP+ G++DI  N+V+   Y  P  H+HI +PP GV+ PKK++
Sbjct: 659 MNGYLWLYERNVLRTTVSSPIKGLQDIEFNQVLNITYLNPRKHRHIPKPPDGVLMPKKIL 718

Query: 105 NSGDLKPDPVLWHEDSGRRPWESQRHNPPGTISGRQLGEVSHRLVMNSLQLKVDHNGYAN 164
            + D+KP PVLWHED+  R    +R    G ++G QLGE +HRLV NSL +K ++  Y +
Sbjct: 719 KAIDIKPFPVLWHEDNSGRRQGRERQQVHGAMAGPQLGEAAHRLVKNSLNIKSNNMPYGS 778


>Glyma19g43160.1 
          Length = 957

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 76/122 (62%), Gaps = 5/122 (4%)

Query: 45  MNGYISPCSGDTQPPIFRSPVVGMEDILDNEVICAVYRLPDPHKHITRPPAGVIFPKKMV 104
           MNGY+     +    I  SP+ G++DI  N+V+   Y  P  H+HI + P GV+ PKK++
Sbjct: 656 MNGYLWLYERNVLRTIVSSPIKGLQDIEFNQVLNITYLNPRKHRHIPKAPDGVLMPKKIL 715

Query: 105 NSGDLKPDPVLWHED-SGRRP-WESQRHNPPGTISGRQLGEVSHRLVMNSLQLKVDHNGY 162
            + D+KP PVLWHE+ SGRR   E Q H   G ++G QLGE +HRLV NSL +K ++  Y
Sbjct: 716 KAIDIKPFPVLWHEENSGRRQGRERQVH---GAMAGPQLGEAAHRLVKNSLNIKSNNMPY 772

Query: 163 AN 164
            +
Sbjct: 773 GS 774