Jatropha Genome Database

JcCA0229911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0229911.10 + phase: 0 /partial
         (185 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g32950.1                                                       340   4e-94
Glyma03g30080.1                                                       338   2e-93
Glyma13g09350.1                                                       110   1e-24
Glyma06g36570.1                                                       104   5e-23
Glyma08g31210.1                                                       102   3e-22
Glyma10g09450.1                                                        79   2e-15
Glyma18g12220.1                                                        69   2e-12

>Glyma19g32950.1 
          Length = 433

 Score =  340 bits (873), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 151/181 (83%), Positives = 173/181 (95%)

Query: 5   QNLAPKDQSRLSEPVKELDIFLSQIAAGVPLDIMPGPNDPANFSLPQQSLHRCLFPGSAT 64
           QNLA KD SR++EP+KELDI LSQIAAG+PLDIMPGP+DPANFSLPQQSLHRCLFPGS+T
Sbjct: 237 QNLASKDLSRMAEPIKELDILLSQIAAGLPLDIMPGPSDPANFSLPQQSLHRCLFPGSST 296

Query: 65  YNTFRSCTNPHCFELDNIRFLGTSGQNIDDLEKYSEAKDKLEFLERTLKWRHLAPTAPNT 124
           YNTFRSCTNPHCFELDN+RFLGTSGQN+DDLEKYSEAKDKLEF+ERTL+WRHLAPTAPNT
Sbjct: 297 YNTFRSCTNPHCFELDNVRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNT 356

Query: 125 LGCYPFTDRDPFLIESCPHVYFVANQDKYGTRMLKGPEGQLIRLISIPKFSETGVAVMVS 184
           LGCYP+TD+DPF IESCPHVYF+ NQDK+ TR++KG EGQL+RL+ +PKFSETGVAVM++
Sbjct: 357 LGCYPYTDKDPFFIESCPHVYFIGNQDKFETRVIKGSEGQLVRLVCVPKFSETGVAVMLN 416

Query: 185 I 185
           +
Sbjct: 417 L 417


>Glyma03g30080.1 
          Length = 433

 Score =  338 bits (867), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 151/181 (83%), Positives = 172/181 (95%)

Query: 5   QNLAPKDQSRLSEPVKELDIFLSQIAAGVPLDIMPGPNDPANFSLPQQSLHRCLFPGSAT 64
           QNLA KD SR++EP+KELDI LSQIAAG+PLDIMPGP+DPANFSLPQQSLHRCLFPGS+ 
Sbjct: 237 QNLASKDLSRMAEPIKELDILLSQIAAGLPLDIMPGPSDPANFSLPQQSLHRCLFPGSSA 296

Query: 65  YNTFRSCTNPHCFELDNIRFLGTSGQNIDDLEKYSEAKDKLEFLERTLKWRHLAPTAPNT 124
           YNTFRSCTNPHCFE+DN+RFLGTSGQN+DDLEKYSEAKDKLEF+ERTL+WRHLAPTAPNT
Sbjct: 297 YNTFRSCTNPHCFEVDNVRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNT 356

Query: 125 LGCYPFTDRDPFLIESCPHVYFVANQDKYGTRMLKGPEGQLIRLISIPKFSETGVAVMVS 184
           LGCYP+TD+DPF IESCPHVYFV NQDK+ TR++KG EGQL+RLI +PKFSETGVAVM++
Sbjct: 357 LGCYPYTDKDPFFIESCPHVYFVGNQDKFETRVIKGSEGQLVRLICVPKFSETGVAVMLN 416

Query: 185 I 185
           +
Sbjct: 417 L 417


>Glyma13g09350.1 
          Length = 57

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 48/56 (85%), Positives = 53/56 (94%)

Query: 70  SCTNPHCFELDNIRFLGTSGQNIDDLEKYSEAKDKLEFLERTLKWRHLAPTAPNTL 125
           SCTNPHCFELDN+RFLGT  QN+DDLEKYS+AKDKLEF+ER L+WRHLAPTAPNTL
Sbjct: 1   SCTNPHCFELDNVRFLGTLVQNVDDLEKYSDAKDKLEFMERALRWRHLAPTAPNTL 56


>Glyma06g36570.1 
          Length = 57

 Score =  104 bits (260), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/56 (80%), Positives = 50/56 (89%)

Query: 70  SCTNPHCFELDNIRFLGTSGQNIDDLEKYSEAKDKLEFLERTLKWRHLAPTAPNTL 125
           SCTN HCFELDN+RFL TS QN+DD EKYSEAKDKLEF+E TL+WRH+APT PNTL
Sbjct: 1   SCTNLHCFELDNVRFLWTSIQNVDDFEKYSEAKDKLEFMEWTLRWRHVAPTVPNTL 56


>Glyma08g31210.1 
          Length = 58

 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 44/56 (78%), Positives = 52/56 (92%)

Query: 70  SCTNPHCFELDNIRFLGTSGQNIDDLEKYSEAKDKLEFLERTLKWRHLAPTAPNTL 125
           SC N HCFELDN++FL TS QN+DDLEKYSEAKDKL+F+E+TL+WRH+APTAPNTL
Sbjct: 1   SCINLHCFELDNVKFLRTSIQNVDDLEKYSEAKDKLKFMEQTLRWRHVAPTAPNTL 56


>Glyma10g09450.1 
          Length = 50

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 42/53 (79%), Gaps = 4/53 (7%)

Query: 73  NPHCFELDNIRFLGTSGQNIDDLEKYSEAKDKLEFLERTLKWRHLAPTAPNTL 125
           NPH       RFL TS QN+DDLEKY EAKDKLEF+ERTL+WRH+APT PNTL
Sbjct: 1   NPHT----GSRFLRTSIQNVDDLEKYLEAKDKLEFMERTLRWRHVAPTTPNTL 49


>Glyma18g12220.1 
          Length = 79

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 38/47 (80%), Gaps = 1/47 (2%)

Query: 87  TSGQNIDDLEKYSEAKDKLEFLERTLKWRHLAPTAPNTL-GCYPFTD 132
           TS QN+DDLEKYS+AKDKLEF+E+TL+WRH+APT    L  CY F D
Sbjct: 29  TSVQNVDDLEKYSKAKDKLEFMEQTLRWRHVAPTLKLMLFVCYLFKD 75